Variant report

Variant	rs2673521
Chromosome Location	chr3:21884008-21884009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1817633	0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2630786	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2630788	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2630789	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2630790	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2630791	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2630794	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2630797	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2630798	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2630800	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2670246	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2670247	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2670248	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2670249	0.82[ASN][1000 genomes]
rs2670251	0.89[AFR][1000 genomes]
rs2670261	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2670262	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2670263	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2670264	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2670273	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2670274	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2670279	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2670280	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2670281	0.89[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2670282	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2673505	0.82[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2673520	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2673523	0.95[ASN][1000 genomes]
rs2673525	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2673528	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2673529	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2673530	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2673531	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2751992	chr3:21786893-22212357	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv948555	chr3:21786893-22212357	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv834632	chr3:21803941-21974082	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2763230	chr3:21879418-21887264	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv1005321	chr3:21882336-21905631	Active TSS Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21881200-21884800	Weak transcription	Aorta	Aorta
2	chr3:21883200-21884600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:21884000-21884800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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