Variant report

Variant	rs2673802
Chromosome Location	chr10:89735084-89735085
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:89621701..89623666-chr10:89733885..89736299,2	MCF-7	breast:
2	chr10:89727852..89730141-chr10:89733915..89736389,2	MCF-7	breast:
3	chr10:89729355..89732120-chr10:89734867..89736636,2	K562	blood:

Variant related genes	Relation type
ENSG00000227268	Chromatin interaction
ENSG00000171862	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2673836	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2735348	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2735357	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv551837	chr10:89707265-89777788	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89714600-89738600	Weak transcription	NHEK	skin
2	chr10:89721800-89735800	Weak transcription	A549	lung
3	chr10:89722000-89736000	Weak transcription	NHLF	lung
4	chr10:89724000-89739000	Weak transcription	Adipose Nuclei	Adipose
5	chr10:89724200-89738600	Weak transcription	HMEC	breast
6	chr10:89724200-89738800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:89724400-89738200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr10:89724400-89738600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:89724800-89736200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:89724800-89738400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr10:89724800-89739400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:89725800-89735600	Weak transcription	Liver	Liver
13	chr10:89726000-89735600	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr10:89726400-89736200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:89726600-89739400	Weak transcription	Fetal Thymus	thymus
16	chr10:89731200-89736800	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr10:89732800-89738200	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr10:89733400-89736200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr10:89733400-89738800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr10:89733800-89735800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:89733800-89736600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr10:89733800-89738400	Weak transcription	NHDF-Ad	bronchial
23	chr10:89734000-89739400	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr10:89734200-89735800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr10:89734200-89737600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr10:89734200-89738000	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr10:89734400-89737600	Enhancers	H1 Cell Line	embryonic stem cell
28	chr10:89734600-89735400	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr10:89734600-89735400	Enhancers	GM12878-XiMat	blood
30	chr10:89734600-89735600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr10:89734600-89735800	Enhancers	Primary B cells from peripheral blood	blood
32	chr10:89734600-89737600	Enhancers	H9 Cell Line	embryonic stem cell
33	chr10:89734800-89735600	Enhancers	Primary B cells from cord blood	blood
34	chr10:89734800-89738400	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr10:89734800-89739200	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr10:89735000-89736000	Enhancers	Pancreatic Islets	Pancreatic Islet

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