Variant report

Variant	rs2676810
Chromosome Location	chr10:93800177-93800178
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93798638..93801510-chr10:93804838..93807467,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10748573	0.86[AFR][1000 genomes]
rs10748574	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1418789	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1711845	0.81[AFR][1000 genomes]
rs1776206	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2066175	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2066176	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2252205	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2676818	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2792026	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4933221	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4933223	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4933702	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6583796	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7078187	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7914187	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7919043	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs833371	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs833377	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051226	chr10:93711296-93915586	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv540745	chr10:93711296-93915586	Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1042818	chr10:93715483-93855032	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv895893	chr10:93747260-93875264	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93704800-93807400	Weak transcription	Gastric	stomach
2	chr10:93774600-93805200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:93785400-93802000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:93785800-93807600	Weak transcription	Pancreas	Pancrea
5	chr10:93786600-93807800	Weak transcription	Fetal Heart	heart
6	chr10:93786800-93804800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:93786800-93807600	Weak transcription	Aorta	Aorta
8	chr10:93787200-93805400	Weak transcription	Right Ventricle	heart
9	chr10:93787200-93812200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr10:93787400-93807600	Weak transcription	Spleen	Spleen
11	chr10:93787400-93811200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:93787400-93818400	Weak transcription	Colonic Mucosa	Colon
13	chr10:93787400-93840000	Weak transcription	Small Intestine	intestine
14	chr10:93787600-93828000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:93788000-93812000	Weak transcription	Brain Anterior Caudate	brain
16	chr10:93788200-93804200	Weak transcription	NHLF	lung
17	chr10:93788400-93814200	Weak transcription	HepG2	liver
18	chr10:93789800-93816400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr10:93791800-93838400	Weak transcription	Brain Substantia Nigra	brain
20	chr10:93792000-93805200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:93792200-93805400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr10:93792200-93807600	Weak transcription	Left Ventricle	heart
23	chr10:93792400-93801000	Weak transcription	Thymus	Thymus
24	chr10:93792400-93809600	Weak transcription	NHEK	skin
25	chr10:93792400-93814800	Weak transcription	Hela-S3	cervix
26	chr10:93792600-93807600	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr10:93792800-93807800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr10:93792800-93837800	Weak transcription	Brain Angular Gyrus	brain
29	chr10:93793000-93807600	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr10:93793000-93814600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr10:93793200-93801200	Weak transcription	Fetal Kidney	kidney
32	chr10:93793200-93812000	Weak transcription	Brain Hippocampus Middle	brain
33	chr10:93793200-93812400	Weak transcription	Placenta	Placenta
34	chr10:93793600-93805000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr10:93793600-93805400	Weak transcription	Lung	lung
36	chr10:93793600-93807600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr10:93793800-93802000	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr10:93793800-93802400	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr10:93793800-93804400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr10:93793800-93805200	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr10:93793800-93807600	Weak transcription	Rectal Smooth Muscle	rectum
42	chr10:93793800-93811400	Weak transcription	Ovary	ovary
43	chr10:93794000-93800600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr10:93794000-93807600	Weak transcription	Primary B cells from cord blood	blood
45	chr10:93794200-93810800	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr10:93794200-93811400	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr10:93794200-93811400	Weak transcription	Stomach Smooth Muscle	stomach
48	chr10:93794200-93811600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr10:93794400-93800400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr10:93794400-93800600	Weak transcription	NH-A	brain

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