Variant report

Variant	rs4933221
Chromosome Location	chr10:93703625-93703626
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93681776..93685679-chr10:93700861..93704266,5	K562	blood:
2	chr10:93696007..93699385-chr10:93701123..93704131,4	MCF-7	breast:
3	chr10:93691322..93693028-chr10:93702196..93704196,2	K562	blood:
4	chr10:93698323..93701055-chr10:93702611..93704544,2	K562	blood:
5	chr10:93692187..93693763-chr10:93702368..93703913,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095564	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10748573	0.92[AFR][1000 genomes]
rs10748574	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1418789	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1776206	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2066175	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2066176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2252205	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2676810	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2676818	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2792026	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4933223	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4933702	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6583796	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7078187	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7914187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7919043	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs833371	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs833377	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93684600-93719600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:93685000-93706200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:93685000-93717800	Weak transcription	Small Intestine	intestine
4	chr10:93685800-93735200	Weak transcription	Fetal Heart	heart
5	chr10:93688800-93711400	Weak transcription	Fetal Brain Male	brain
6	chr10:93689200-93719200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr10:93690000-93709600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:93690800-93704000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr10:93690800-93742400	Weak transcription	Stomach Mucosa	stomach
10	chr10:93691000-93709600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:93691800-93707400	Strong transcription	Dnd41	blood
12	chr10:93691800-93716600	Weak transcription	NHLF	lung
13	chr10:93691800-93741400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:93692000-93711400	Weak transcription	Brain Hippocampus Middle	brain
15	chr10:93694400-93704400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr10:93695000-93707000	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr10:93696400-93711200	Weak transcription	Colon Smooth Muscle	Colon
18	chr10:93696600-93705200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr10:93696600-93711200	Weak transcription	Brain Angular Gyrus	brain
20	chr10:93696600-93713200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:93696800-93704000	Weak transcription	Brain Anterior Caudate	brain
22	chr10:93696800-93704400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr10:93696800-93708600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr10:93696800-93711200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr10:93696800-93711200	Weak transcription	K562	blood
26	chr10:93696800-93711400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr10:93696800-93711600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr10:93696800-93712000	Weak transcription	Psoas Muscle	Psoas
29	chr10:93696800-93712000	Weak transcription	Right Ventricle	heart
30	chr10:93696800-93712200	Weak transcription	Aorta	Aorta
31	chr10:93696800-93712800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr10:93696800-93715000	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr10:93696800-93716400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr10:93696800-93735600	Weak transcription	Pancreas	Pancrea
35	chr10:93697000-93704000	Weak transcription	Fetal Kidney	kidney
36	chr10:93697000-93717000	Weak transcription	Brain Substantia Nigra	brain
37	chr10:93697000-93718000	Weak transcription	Spleen	Spleen
38	chr10:93697000-93735600	Weak transcription	Esophagus	oesophagus
39	chr10:93697200-93711200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr10:93697200-93711800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr10:93697200-93712200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr10:93697200-93718400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr10:93697400-93711000	Weak transcription	HSMMtube	muscle
44	chr10:93697600-93704400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr10:93697800-93704000	Weak transcription	Osteobl	bone
46	chr10:93697800-93704600	Weak transcription	NH-A	brain
47	chr10:93697800-93748800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr10:93698000-93703800	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr10:93698000-93704400	Weak transcription	HMEC	breast
50	chr10:93698000-93711800	Weak transcription	A549	lung

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