Variant report

Variant	rs2677112
Chromosome Location	chr1:215825167-215825168
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10779657	0.83[ASN][1000 genomes]
rs12748877	1.00[LWK][hapmap]
rs1361779	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1819739	0.92[CEU][hapmap];1.00[LWK][hapmap]
rs2677111	0.91[JPT][hapmap]
rs2797224	1.00[ASW][hapmap];0.96[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2797229	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2797386	0.92[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv873171	chr1:215825167-215925167	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215823200-215825200	Flanking Active TSS	Liver	Liver
2	chr1:215823200-215825400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr1:215823200-215826600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:215823600-215825400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr1:215824200-215825200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:215824200-215825600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr1:215824200-215827200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr1:215824600-215825600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:215824800-215825200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr1:215824800-215826200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr1:215825000-215825400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr1:215825000-215825400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr1:215825000-215825400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links