Variant report

Variant	rs267751
Chromosome Location	chr5:36104114-36104115
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36102224..36105150-chr5:36106081..36108767,3	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs267756	1.00[ASW][hapmap];0.84[LWK][hapmap]
rs267763	1.00[ASW][hapmap];0.84[LWK][hapmap]
rs33672	0.89[AFR][1000 genomes]
rs40029	1.00[ASW][hapmap];0.84[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv32711	chr5:36047797-36146166	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36090800-36107000	Weak transcription	HSMMtube	muscle
2	chr5:36092200-36106000	Weak transcription	Primary B cells from cord blood	blood
3	chr5:36092800-36116200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:36093600-36107600	Weak transcription	Psoas Muscle	Psoas
5	chr5:36096600-36128600	Weak transcription	Fetal Brain Male	brain
6	chr5:36098200-36104200	Weak transcription	Primary T cells from cord blood	blood
7	chr5:36098200-36106800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:36098600-36104200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr5:36098600-36106200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr5:36098600-36106800	Weak transcription	Left Ventricle	heart
11	chr5:36098600-36107400	Weak transcription	Right Ventricle	heart
12	chr5:36098600-36107800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr5:36098800-36113200	Weak transcription	Fetal Stomach	stomach
14	chr5:36099000-36104200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr5:36099000-36116800	Weak transcription	Fetal Intestine Small	intestine
16	chr5:36100200-36107800	Weak transcription	Aorta	Aorta
17	chr5:36100200-36127600	Weak transcription	Pancreas	Pancrea
18	chr5:36100200-36139400	Weak transcription	Gastric	stomach
19	chr5:36100600-36106800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr5:36100800-36106000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr5:36100800-36107600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr5:36100800-36127600	Weak transcription	Spleen	Spleen
23	chr5:36101000-36105800	Weak transcription	Brain Anterior Caudate	brain
24	chr5:36101200-36150800	Weak transcription	Colonic Mucosa	Colon
25	chr5:36101400-36104400	Weak transcription	Placenta	Placenta
26	chr5:36101400-36107600	Weak transcription	Small Intestine	intestine
27	chr5:36102000-36118400	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr5:36102200-36106000	Weak transcription	Fetal Muscle Leg	muscle
29	chr5:36102200-36108600	Strong transcription	Adipose Nuclei	Adipose
30	chr5:36102200-36118400	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr5:36102400-36104200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr5:36102400-36105600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr5:36102400-36107000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr5:36102400-36110400	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr5:36102400-36111800	Strong transcription	Duodenum Mucosa	Duodenum
36	chr5:36102600-36104200	Weak transcription	Primary hematopoietic stem cells	blood
37	chr5:36102600-36104200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr5:36102600-36104200	Weak transcription	NH-A	brain
39	chr5:36102600-36104600	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr5:36102600-36105000	Weak transcription	K562	blood
41	chr5:36102600-36106000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr5:36102600-36107000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr5:36102600-36107000	Weak transcription	Ovary	ovary
44	chr5:36102600-36107400	Weak transcription	Esophagus	oesophagus
45	chr5:36102600-36107600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr5:36102600-36129200	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr5:36102600-36141400	Weak transcription	Hela-S3	cervix
48	chr5:36102800-36106800	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr5:36102800-36107600	Weak transcription	GM12878-XiMat	blood
50	chr5:36103000-36104600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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