Variant report

Variant	rs33672
Chromosome Location	chr5:36153751-36153752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:36153628-36153975	Hela-S3	cervix:	n/a	n/a
2	MAFF	chr5:36153621-36153813	K562	blood:	n/a	n/a
3	FOXA1	chr5:36153676-36154311	HepG2	liver:	n/a	n/a
4	MAFK	chr5:36153628-36154208	HepG2	liver:	n/a	chr5:36153647-36153658
5	MAFF	chr5:36153608-36154217	HepG2	liver:	n/a	n/a
6	NR2F2	chr5:36153700-36154355	HepG2	liver:	n/a	n/a
7	FOXA2	chr5:36153549-36154472	HepG2	liver:	n/a	n/a
8	TEAD4	chr5:36153704-36154332	HepG2	liver:	n/a	n/a
9	MAFK	chr5:36153583-36154133	IMR90	lung:	n/a	chr5:36153647-36153658
10	NR2F2	chr5:36153588-36154375	HepG2	liver:	n/a	n/a
11	FOXA1	chr5:36153700-36154337	HepG2	liver:	n/a	n/a
12	MYBL2	chr5:36153733-36154319	HepG2	liver:	n/a	n/a
13	MAFK	chr5:36153602-36154240	HepG2	liver:	n/a	chr5:36153647-36153658
14	FOXA1	chr5:36153707-36154175	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36150467..36154483-chr5:36238242..36244873,13	K562	blood:
2	chr5:36150463..36155255-chr5:36239958..36244873,10	K562	blood:

Variant related genes	Relation type
RNU6-1305P	TF binding region
LMBRD2	TF binding region
ENSG00000152620	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs267751	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36148600-36154600	Active TSS	GM12878-XiMat	blood
2	chr5:36150600-36154000	Active TSS	iPS-18 Cell Line	embryonic stem cell
3	chr5:36150800-36153800	Active TSS	H1 Cell Line	embryonic stem cell
4	chr5:36150800-36153800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:36150800-36153800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:36151000-36153800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:36151200-36153800	Active TSS	HSMMtube	muscle
8	chr5:36152400-36153800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr5:36152400-36153800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:36152400-36153800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
11	chr5:36152400-36153800	Flanking Active TSS	Duodenum Mucosa	Duodenum
12	chr5:36152400-36154000	Flanking Active TSS	Adipose Nuclei	Adipose
13	chr5:36152400-36155000	Transcr. at gene 5' and 3'	Dnd41	blood
14	chr5:36152600-36154000	Flanking Active TSS	Liver	Liver
15	chr5:36152800-36154000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:36152800-36154000	Flanking Active TSS	Fetal Brain Male	brain
17	chr5:36152800-36154200	Enhancers	Spleen	Spleen
18	chr5:36152800-36155600	Transcr. at gene 5' and 3'	Fetal Muscle Leg	muscle
19	chr5:36153000-36153800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr5:36153000-36153800	Flanking Active TSS	HUVEC	blood vessel
21	chr5:36153000-36154000	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:36153000-36154000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr5:36153000-36154000	Enhancers	Stomach Mucosa	stomach
24	chr5:36153000-36154400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr5:36153000-36154400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr5:36153000-36154400	Transcr. at gene 5' and 3'	Fetal Brain Female	brain
27	chr5:36153000-36154600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr5:36153000-36156200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr5:36153000-36156400	Weak transcription	Aorta	Aorta
30	chr5:36153000-36156400	Transcr. at gene 5' and 3'	HSMM	muscle
31	chr5:36153200-36153800	Enhancers	Primary B cells from peripheral blood	blood
32	chr5:36153200-36153800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr5:36153200-36153800	Enhancers	Brain Substantia Nigra	brain
34	chr5:36153200-36153800	Enhancers	Gastric	stomach
35	chr5:36153200-36153800	Weak transcription	Ovary	ovary
36	chr5:36153200-36153800	Enhancers	Pancreas	Pancrea
37	chr5:36153200-36154000	Enhancers	Primary T cells fromperipheralblood	blood
38	chr5:36153200-36154000	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr5:36153200-36154000	Active TSS	Rectal Mucosa Donor 29	rectum
40	chr5:36153200-36154000	Enhancers	Rectal Smooth Muscle	rectum
41	chr5:36153200-36154200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr5:36153200-36154200	Enhancers	Primary T helper cells PMA-I stimulated	--
43	chr5:36153200-36154200	Enhancers	Brain Cingulate Gyrus	brain
44	chr5:36153200-36154200	Active TSS	Right Ventricle	heart
45	chr5:36153200-36154400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr5:36153200-36154400	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr5:36153200-36154400	Genic enhancers	Brain Anterior Caudate	brain
48	chr5:36153200-36154400	Enhancers	Left Ventricle	heart
49	chr5:36153200-36154400	Enhancers	Placenta Amnion	Placenta Amnion
50	chr5:36153200-36154400	Enhancers	Small Intestine	intestine

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