Variant report

Variant	rs2677763
Chromosome Location	chr3:178921023-178921024
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:178916179..178918433-chr3:178920259..178922667,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13082485	1.00[ASN][1000 genomes]
rs13099856	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1517586	0.91[ASN][1000 genomes]
rs2542298	0.88[ASN][1000 genomes]
rs2677764	1.00[ASN][1000 genomes]
rs2677770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2699887	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2699891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2699893	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2699905	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2699906	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4955801	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6784495	0.91[ASN][1000 genomes]
rs73187259	1.00[ASN][1000 genomes]
rs9968179	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998253	chr3:178622707-179196274	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv536814	chr3:178622707-179196274	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv3354111	chr3:178833305-179156908	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178899200-178951800	Weak transcription	K562	blood
2	chr3:178900000-178929800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:178906400-178962400	Weak transcription	HepG2	liver
4	chr3:178908000-178923600	Weak transcription	Fetal Brain Female	brain
5	chr3:178908800-178922800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:178909000-178931400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:178909000-178947000	Weak transcription	Ovary	ovary
8	chr3:178909400-178925400	Weak transcription	Aorta	Aorta
9	chr3:178911200-178953400	Weak transcription	Gastric	stomach
10	chr3:178912400-178924000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:178912400-178978600	Weak transcription	Right Ventricle	heart
12	chr3:178912600-178947800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:178913000-178925000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:178913000-178925400	Weak transcription	Pancreas	Pancrea
15	chr3:178913000-178930800	Weak transcription	Left Ventricle	heart
16	chr3:178913000-178948200	Weak transcription	Psoas Muscle	Psoas
17	chr3:178913200-178945200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr3:178913200-178947000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr3:178913200-178947000	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr3:178913800-178954000	Weak transcription	Fetal Heart	heart
21	chr3:178913800-178969000	Weak transcription	Small Intestine	intestine
22	chr3:178914000-178921400	Weak transcription	Fetal Kidney	kidney
23	chr3:178914000-178928200	Weak transcription	Brain Hippocampus Middle	brain
24	chr3:178914200-178928000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr3:178914200-178928000	Weak transcription	Brain Substantia Nigra	brain
26	chr3:178914200-178928200	Weak transcription	Brain Anterior Caudate	brain
27	chr3:178914600-178921400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr3:178914600-178945200	Weak transcription	HMEC	breast
29	chr3:178914800-178921800	Weak transcription	Fetal Brain Male	brain
30	chr3:178914800-178922000	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr3:178914800-178926400	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr3:178914800-178927200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr3:178914800-178927800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr3:178914800-178928000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr3:178914800-178928000	Weak transcription	Colon Smooth Muscle	Colon
36	chr3:178914800-178928000	Weak transcription	Osteobl	bone
37	chr3:178914800-178928200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr3:178914800-178933400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr3:178914800-178941400	Weak transcription	GM12878-XiMat	blood
40	chr3:178914800-178942800	Weak transcription	NH-A	brain
41	chr3:178914800-178948000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr3:178914800-178972800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr3:178915400-178923400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr3:178915400-178929400	Weak transcription	HSMMtube	muscle
45	chr3:178915400-178931000	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr3:178915400-178946000	Weak transcription	Stomach Mucosa	stomach
47	chr3:178915400-178947000	Weak transcription	NHDF-Ad	bronchial
48	chr3:178915600-178921800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr3:178915600-178947600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr3:178915800-178965200	Weak transcription	Hela-S3	cervix

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