Variant report

Variant	rs73187259
Chromosome Location	chr3:178891811-178891812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:178865398..178868537-chr3:178888868..178891938,3	MCF-7	breast:
2	chr3:178883467..178885785-chr3:178891482..178893959,2	K562	blood:
3	chr3:178891781..178894758-chr3:178901909..178904636,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000229102	Chromatin interaction
ENSG00000121879	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13082485	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13099856	1.00[ASN][1000 genomes]
rs1517586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2542298	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2677763	1.00[ASN][1000 genomes]
rs2677764	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2677770	1.00[ASN][1000 genomes]
rs2699887	1.00[ASN][1000 genomes]
rs2699891	0.91[ASN][1000 genomes]
rs2699893	0.97[ASN][1000 genomes]
rs2699905	0.94[ASN][1000 genomes]
rs2699906	1.00[ASN][1000 genomes]
rs4955801	0.97[ASN][1000 genomes]
rs6784495	0.91[ASN][1000 genomes]
rs9968179	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998253	chr3:178622707-179196274	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv536814	chr3:178622707-179196274	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv3354111	chr3:178833305-179156908	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv275373	chr3:178887218-178892336	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178867800-178900200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:178868000-178892400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:178868600-178893000	Weak transcription	Aorta	Aorta
4	chr3:178869200-178898000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:178870800-178896400	Weak transcription	K562	blood
6	chr3:178877400-178897800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:178879400-178892000	Weak transcription	Lung	lung
8	chr3:178879400-178896400	Weak transcription	Right Atrium	heart
9	chr3:178879600-178896400	Weak transcription	Left Ventricle	heart
10	chr3:178883600-178892400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr3:178883600-178893600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:178883800-178905800	Weak transcription	Fetal Kidney	kidney
13	chr3:178887200-178892400	Weak transcription	HUVEC	blood vessel
14	chr3:178887200-178912000	Weak transcription	Thymus	Thymus
15	chr3:178888000-178898800	Weak transcription	Fetal Brain Male	brain
16	chr3:178888800-178896800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr3:178890800-178896600	Weak transcription	Fetal Lung	lung
18	chr3:178891400-178893400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr3:178891600-178892400	Enhancers	Primary T cells fromperipheralblood	blood
20	chr3:178891600-178894000	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr3:178891800-178892200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr3:178891800-178893000	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr3:178891800-178893400	Enhancers	Primary B cells from peripheral blood	blood
24	chr3:178891800-178893400	Enhancers	GM12878-XiMat	blood
25	chr3:178891800-178894200	Enhancers	Primary B cells from cord blood	blood
26	chr3:178891800-178894400	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr3:178891800-178894600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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