Variant report

Variant	rs2678832
Chromosome Location	chr8:96070181-96070182
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:96068524..96071355-chr8:96097754..96100421,3	MCF-7	breast:
2	chr8:96056185..96059291-chr8:96067561..96070788,3	MCF-7	breast:
3	chr8:96069464..96073294-chr8:96111631..96115396,4	MCF-7	breast:
4	chr8:96066564..96073895-chr8:96144947..96151399,9	MCF-7	breast:
5	chr8:96069296..96072093-chr8:96190510..96193088,2	MCF-7	breast:
6	chr8:96068988..96071455-chr8:96145408..96146985,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175895	Chromatin interaction
ENSG00000254248	Chromatin interaction
ENSG00000156170	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10105495	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2459966	0.84[AMR][1000 genomes]
rs2599716	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2599718	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2599719	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2599723	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2678821	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2678836	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2945553	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62523112	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv508520	chr8:95939373-96140068	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv891205	chr8:96062601-96115476	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96037800-96070200	Weak transcription	Aorta	Aorta
2	chr8:96038200-96072400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:96038200-96080000	Weak transcription	Colonic Mucosa	Colon
4	chr8:96038400-96085200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr8:96042800-96072200	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr8:96044200-96071800	Strong transcription	Dnd41	blood
7	chr8:96046400-96070200	Weak transcription	Gastric	stomach
8	chr8:96048400-96071800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:96052200-96070200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:96062000-96070400	Weak transcription	Right Ventricle	heart
11	chr8:96062000-96073200	Weak transcription	Psoas Muscle	Psoas
12	chr8:96062000-96078400	Weak transcription	Small Intestine	intestine
13	chr8:96062000-96083800	Weak transcription	Fetal Brain Male	brain
14	chr8:96062200-96070200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:96062200-96070200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr8:96062200-96070200	Weak transcription	NHEK	skin
17	chr8:96062200-96072600	Weak transcription	Fetal Heart	heart
18	chr8:96062400-96073000	Weak transcription	Pancreas	Pancrea
19	chr8:96062600-96070200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr8:96062600-96070200	Weak transcription	Brain Germinal Matrix	brain
21	chr8:96062600-96070200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr8:96062600-96070200	Weak transcription	Esophagus	oesophagus
23	chr8:96062600-96070200	Weak transcription	Lung	lung
24	chr8:96062600-96070200	Weak transcription	Spleen	Spleen
25	chr8:96062600-96070200	Weak transcription	Osteobl	bone
26	chr8:96062600-96072000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr8:96062600-96072800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr8:96062600-96079000	Weak transcription	NHLF	lung
29	chr8:96062600-96079800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr8:96062800-96073000	Weak transcription	Ovary	ovary
31	chr8:96062800-96074600	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr8:96062800-96079200	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr8:96062800-96079800	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr8:96062800-96080200	Weak transcription	Brain Angular Gyrus	brain
35	chr8:96063000-96070200	Weak transcription	Brain Hippocampus Middle	brain
36	chr8:96063000-96070200	Weak transcription	Rectal Smooth Muscle	rectum
37	chr8:96063200-96074200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr8:96063200-96078800	Weak transcription	HSMM	muscle
39	chr8:96063200-96078800	Weak transcription	NH-A	brain
40	chr8:96063400-96070200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr8:96063400-96070200	Weak transcription	Colon Smooth Muscle	Colon
42	chr8:96063400-96070200	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr8:96063400-96071800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr8:96063400-96074200	Weak transcription	HMEC	breast
45	chr8:96063600-96072600	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr8:96063800-96070200	Weak transcription	Fetal Lung	lung
47	chr8:96063800-96070200	Weak transcription	A549	lung
48	chr8:96063800-96070400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr8:96063800-96074800	Weak transcription	Fetal Kidney	kidney
50	chr8:96063800-96080400	Weak transcription	Brain Inferior Temporal Lobe	brain

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