Variant report

Variant	rs62523112
Chromosome Location	chr8:96024387-96024388
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10105495	0.95[EUR][1000 genomes]
rs2599716	0.93[EUR][1000 genomes]
rs2599718	0.95[EUR][1000 genomes]
rs2599719	0.95[EUR][1000 genomes]
rs2599723	0.95[EUR][1000 genomes]
rs2678821	0.95[EUR][1000 genomes]
rs2678832	0.95[EUR][1000 genomes]
rs2678836	0.95[EUR][1000 genomes]
rs2945553	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv508520	chr8:95939373-96140068	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv524876	chr8:96000919-96027306	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:96003200-96032600	Weak transcription	Gastric	stomach
2	chr8:96009000-96036400	Weak transcription	Spleen	Spleen
3	chr8:96021600-96024800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:96021600-96027000	Enhancers	HepG2	liver
5	chr8:96021800-96024800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:96021800-96025400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:96022600-96024800	Enhancers	NHLF	lung
8	chr8:96022600-96025000	Weak transcription	Fetal Stomach	stomach
9	chr8:96023000-96024800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr8:96023000-96025600	Enhancers	Osteobl	bone
11	chr8:96023200-96030200	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr8:96023400-96025200	Enhancers	Liver	Liver
13	chr8:96023400-96026000	Weak transcription	Left Ventricle	heart
14	chr8:96023400-96029000	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr8:96023400-96032600	Weak transcription	Right Atrium	heart
16	chr8:96023400-96036600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr8:96023600-96025400	Enhancers	NHDF-Ad	bronchial
18	chr8:96023800-96025000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr8:96024200-96024600	Flanking Active TSS	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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