Variant report

Variant	rs2678870
Chromosome Location	chr2:58153375-58153376
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10188070	0.94[JPT][hapmap]
rs1040224	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs1040225	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs12622856	0.84[JPT][hapmap]
rs12713370	0.89[CEU][hapmap];0.94[JPT][hapmap]
rs1356544	0.81[EUR][1000 genomes]
rs1356545	0.81[EUR][1000 genomes]
rs1401100	0.89[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs1518395	0.89[CEU][hapmap];0.94[JPT][hapmap]
rs1518399	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1568252	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1568253	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2043890	0.83[JPT][hapmap]
rs2312141	0.80[EUR][1000 genomes]
rs2312147	0.85[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap]
rs2465804	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs2678880	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs2678881	0.82[EUR][1000 genomes]
rs2678889	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs2678897	0.85[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2678901	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs2678903	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs2678904	0.81[EUR][1000 genomes]
rs2678905	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs2678906	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs2678908	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2678915	0.82[EUR][1000 genomes]
rs2683634	0.81[EUR][1000 genomes]
rs2717001	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2717002	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs2717003	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2717004	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs2717006	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2717007	0.82[EUR][1000 genomes]
rs2717015	0.80[EUR][1000 genomes]
rs2717019	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2717023	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2717024	0.92[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2717031	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs2717036	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2717040	0.89[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs2717043	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2717056	0.80[EUR][1000 genomes]
rs6545677	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs6732310	0.89[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap]
rs908730	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs970941	0.91[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874196	chr2:57946148-58220320	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1010981	chr2:58013389-58205699	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv874199	chr2:58031249-58161520	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv834159	chr2:58101262-58283655	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links