Variant report

Variant	rs2680216
Chromosome Location	chr9:109995551-109995552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:109994966..109998554-chr9:110000062..110002388,3	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10739232	0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs10759217	0.87[EUR][1000 genomes]
rs10759218	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs10759219	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs10759220	0.81[AFR][1000 genomes]
rs10759221	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs10816471	0.96[AFR][1000 genomes]
rs10816472	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs10978764	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs10978765	0.96[AFR][1000 genomes]
rs10978766	0.88[EUR][1000 genomes]
rs10978770	0.89[CEU][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs1519051	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1519052	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1535766	0.85[CEU][hapmap]
rs2680218	0.85[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs2680219	0.95[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2808364	0.95[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs4363259	0.86[EUR][1000 genomes]
rs7847661	0.96[AFR][1000 genomes]
rs7847784	0.96[AFR][1000 genomes]
rs7848194	0.92[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7852259	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7852295	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs7861645	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs7861827	0.96[AFR][1000 genomes]
rs7862063	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs7862103	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs7866312	0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs7866353	0.89[CEU][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7866797	0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs7867706	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831682	chr9:109937181-110075453	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:109990600-109997400	Weak transcription	Liver	Liver
2	chr9:109992000-109995800	Weak transcription	Fetal Lung	lung
3	chr9:109995200-109995600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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