Variant report

Variant	rs7862063
Chromosome Location	chr9:110002036-110002037
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:110000595..110013733-chr9:110042800..110048700,27	MCF-7	breast:
2	chr9:110001230..110003494-chr9:110052662..110055320,2	MCF-7	breast:
3	chr9:110001502..110002534-chr9:110103139..110104123,8	MCF-7	breast:
4	chr9:110001517..110002205-chr9:110061655..110062417,2	MCF-7	breast:
5	chr9:109997045..109999849-chr9:110000685..110002475,2	K562	blood:
6	chr9:110000462..110002471-chr9:110023885..110026019,2	MCF-7	breast:
7	chr9:109994966..109998554-chr9:110000062..110002388,3	MCF-7	breast:
8	chr9:110001935..110002443-chr9:110184199..110185147,2	MCF-7	breast:
9	chr9:110001311..110002427-chr9:110103159..110104135,5	MCF-7	breast:
10	chr9:109996343..109999220-chr9:109999435..110002268,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000119318	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10739232	0.95[JPT][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10759218	0.95[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10759219	1.00[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10759220	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10759221	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10816471	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10816472	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10978764	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10978765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10978766	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10978770	0.95[JPT][hapmap];0.82[YRI][hapmap]
rs1519051	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1519052	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1535766	0.95[JPT][hapmap]
rs2680216	0.96[AFR][1000 genomes]
rs2680218	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2680219	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2808364	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4481670	0.84[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7847661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7847784	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7848194	0.86[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7852259	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7852295	0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7861645	0.96[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7861827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7862103	0.84[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7866312	0.96[CEU][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7866353	0.95[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7866797	1.00[CEU][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7867706	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831682	chr9:109937181-110075453	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv893698	chr9:109998563-110052660	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:109998600-110006800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:109999200-110008600	Weak transcription	Liver	Liver
3	chr9:110000600-110003200	Weak transcription	NHDF-Ad	bronchial
4	chr9:110000600-110003400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:110000800-110002200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr9:110000800-110003600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr9:110001400-110002200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:110001400-110002400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr9:110001400-110002400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:110001600-110002400	Enhancers	HepG2	liver
11	chr9:110001800-110002200	Enhancers	Fetal Kidney	kidney
12	chr9:110001800-110002400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr9:110001800-110002400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:110001800-110002400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:110001800-110006000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr9:110002000-110002200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:110002000-110002400	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr9:110002000-110002400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:110002000-110005000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:110002000-110010000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr9:110002000-110011400	Weak transcription	H1 Cell Line	embryonic stem cell

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