Variant report

Variant	rs2680655
Chromosome Location	chr3:53678446-53678447
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1356657	1.00[AMR][1000 genomes]
rs1356658	1.00[AMR][1000 genomes]
rs1401493	1.00[AMR][1000 genomes]
rs1401498	1.00[AMR][1000 genomes]
rs2612017	1.00[AMR][1000 genomes]
rs2612021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2633711	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2633712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2633733	1.00[AMR][1000 genomes]
rs2680653	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2680667	1.00[AMR][1000 genomes]
rs6780679	1.00[AMR][1000 genomes]
rs6798837	1.00[AMR][1000 genomes]
rs72976490	1.00[AMR][1000 genomes]
rs746487	1.00[AMR][1000 genomes]
rs7630968	1.00[AMR][1000 genomes]
rs9857905	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9875748	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1001128	chr3:53659570-53927842	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53652800-53684000	Weak transcription	Right Atrium	heart
2	chr3:53666400-53681400	Weak transcription	Fetal Lung	lung
3	chr3:53667600-53680600	Weak transcription	Fetal Intestine Large	intestine
4	chr3:53676800-53688600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:53677600-53700000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr3:53678000-53681400	Weak transcription	Fetal Intestine Small	intestine
7	chr3:53678000-53687000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr3:53678200-53679400	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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