Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:53661729..53666678-chr3:53666737..53670217,5	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1356656	1.00[MEX][hapmap]
rs1356657	0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs1356658	0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs1401493	0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs1401498	0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs2612017	1.00[MEX][hapmap];0.91[MKK][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs2612021	0.94[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2633711	0.88[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2633712	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2633733	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs2680653	1.00[AMR][1000 genomes]
rs2680655	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2680667	0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs6780679	1.00[AMR][1000 genomes]
rs6798837	1.00[AMR][1000 genomes]
rs72976490	1.00[AMR][1000 genomes]
rs746487	0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs7614320	0.93[YRI][hapmap]
rs7630673	1.00[MEX][hapmap]
rs7630968	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs898414	0.84[ASW][hapmap];0.93[YRI][hapmap]
rs9311508	0.87[YRI][hapmap]
rs9845102	0.87[YRI][hapmap]
rs9875160	0.87[YRI][hapmap]
rs9875748	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs9878618	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1001128	chr3:53659570-53927842	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53652800-53684000	Weak transcription	Right Atrium	heart
2	chr3:53666400-53681400	Weak transcription	Fetal Lung	lung
3	chr3:53667600-53680600	Weak transcription	Fetal Intestine Large	intestine
4	chr3:53668000-53668800	Weak transcription	Fetal Intestine Small	intestine
5	chr3:53668200-53672600	Weak transcription	Stomach Mucosa	stomach
6	chr3:53668600-53668800	Enhancers	Gastric	stomach

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