Variant report

Variant	rs7630673
Chromosome Location	chr3:53662618-53662619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:53661729..53666678-chr3:53666737..53670217,5	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1356656	1.00[MEX][hapmap]
rs2612017	1.00[MEX][hapmap]
rs2633708	0.87[AMR][1000 genomes]
rs7630968	1.00[MEX][hapmap]
rs9857905	1.00[MEX][hapmap]
rs9875748	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1001128	chr3:53659570-53927842	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7630673	TSPAN3	trans	lymphoblastoid	seeQTL

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53652800-53684000	Weak transcription	Right Atrium	heart
2	chr3:53659000-53662800	Weak transcription	Fetal Brain Male	brain
3	chr3:53659200-53663400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:53659400-53664600	Weak transcription	Fetal Kidney	kidney
5	chr3:53659600-53662800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr3:53659600-53662800	Weak transcription	Fetal Brain Female	brain
7	chr3:53659600-53663400	Weak transcription	Lung	lung
8	chr3:53659600-53663600	Weak transcription	Pancreas	Pancrea
9	chr3:53661400-53667200	Weak transcription	Fetal Intestine Large	intestine
10	chr3:53661600-53663200	Weak transcription	Esophagus	oesophagus
11	chr3:53661600-53665000	Weak transcription	Fetal Intestine Small	intestine
12	chr3:53662000-53663600	Enhancers	Fetal Lung	lung
13	chr3:53662000-53665400	Enhancers	Stomach Mucosa	stomach
14	chr3:53662200-53662800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:53662200-53662800	Enhancers	Stomach Smooth Muscle	stomach
16	chr3:53662200-53663600	Enhancers	HMEC	breast
17	chr3:53662200-53663800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:53662200-53664000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:53662200-53664200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr3:53662200-53664800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:53662200-53664800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:53662400-53663600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:53662400-53663800	Enhancers	Rectal Smooth Muscle	rectum
24	chr3:53662400-53664400	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr3:53662600-53663200	Enhancers	NHEK	skin
26	chr3:53662600-53663400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr3:53662600-53663400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr3:53662600-53663600	Enhancers	Brain Germinal Matrix	brain
29	chr3:53662600-53664200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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