Variant report

Variant	rs9878618
Chromosome Location	chr3:53648218-53648219
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1356657	0.94[YRI][hapmap]
rs1356658	0.94[YRI][hapmap];0.85[AFR][1000 genomes]
rs1401493	0.94[YRI][hapmap]
rs1401498	0.94[YRI][hapmap]
rs2612017	0.93[YRI][hapmap]
rs2612021	0.83[YRI][hapmap]
rs2633733	0.88[YRI][hapmap]
rs2680653	0.85[AFR][1000 genomes]
rs2680667	0.94[YRI][hapmap]
rs36003262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs746487	0.94[YRI][hapmap]
rs7614320	0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs898414	0.93[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9311508	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9845102	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9857905	0.87[YRI][hapmap]
rs9875160	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53635400-53650200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:53639400-53650200	Weak transcription	Fetal Intestine Small	intestine
3	chr3:53640000-53650800	Weak transcription	Fetal Intestine Large	intestine
4	chr3:53641200-53650000	Weak transcription	Fetal Lung	lung
5	chr3:53645400-53651000	Weak transcription	Lung	lung
6	chr3:53646200-53649200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr3:53646800-53651000	Weak transcription	Spleen	Spleen
8	chr3:53647000-53649000	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr3:53647000-53650200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:53647000-53650400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr3:53647600-53648400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr3:53647800-53648400	Weak transcription	Primary B cells from cord blood	blood
13	chr3:53648200-53648600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr3:53648200-53648800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr3:53648200-53648800	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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