Variant report

Variant	rs36003262
Chromosome Location	chr3:53651134-53651135
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1356658	0.85[AFR][1000 genomes]
rs17053285	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17053295	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2292918	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2612020	0.93[ASN][1000 genomes]
rs2633708	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2633709	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2680653	0.85[AFR][1000 genomes]
rs2680657	0.93[ASN][1000 genomes]
rs2680659	0.93[ASN][1000 genomes]
rs3774459	1.00[EUR][1000 genomes]
rs3774484	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3774485	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3774499	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3774500	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3774513	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3774521	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3774524	0.84[ASN][1000 genomes]
rs55999888	0.95[ASN][1000 genomes]
rs6788419	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs715781	1.00[EUR][1000 genomes]
rs72967859	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72978531	0.93[ASN][1000 genomes]
rs73840122	1.00[EUR][1000 genomes]
rs7614320	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs898412	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs898413	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs898414	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9311508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9311511	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9845102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9848595	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9875160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9878618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53648800-53651600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:53649600-53651200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:53650000-53651200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:53650000-53651200	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:53650000-53651200	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr3:53650000-53651400	Enhancers	Fetal Kidney	kidney
7	chr3:53650000-53651400	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr3:53650000-53652000	Enhancers	Fetal Lung	lung
9	chr3:53650200-53651200	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr3:53650200-53651400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:53650200-53651400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:53650200-53651400	Enhancers	Fetal Muscle Leg	muscle
13	chr3:53650200-53651400	Enhancers	Placenta	Placenta
14	chr3:53650200-53653200	Strong transcription	Fetal Intestine Small	intestine
15	chr3:53650400-53651400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:53650600-53651200	Enhancers	Fetal Brain Male	brain
17	chr3:53650800-53651200	Enhancers	Fetal Intestine Large	intestine
18	chr3:53650800-53651400	Enhancers	Fetal Stomach	stomach
19	chr3:53650800-53651800	Enhancers	Brain Angular Gyrus	brain
20	chr3:53650800-53653200	Enhancers	Colonic Mucosa	Colon
21	chr3:53650800-53653600	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr3:53651000-53651200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr3:53651000-53651200	Enhancers	Brain Substantia Nigra	brain
24	chr3:53651000-53651200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
25	chr3:53651000-53651400	Weak transcription	Duodenum Mucosa	Duodenum
26	chr3:53651000-53651400	Enhancers	Spleen	Spleen
27	chr3:53651000-53651800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr3:53651000-53652000	Enhancers	Lung	lung

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