Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs13326101	0.82[AFR][1000 genomes]
rs17053285	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17053295	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2292918	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2612020	0.84[ASN][1000 genomes]
rs2633708	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2633709	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2680657	0.84[ASN][1000 genomes]
rs2680659	0.84[ASN][1000 genomes]
rs36003262	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3774459	1.00[EUR][1000 genomes]
rs3774484	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3774485	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3774499	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3774500	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3774513	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3774521	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3774524	0.93[ASN][1000 genomes]
rs55999888	0.86[ASN][1000 genomes]
rs6788419	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs715781	1.00[EUR][1000 genomes]
rs72967859	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72978531	0.93[ASN][1000 genomes]
rs73840122	1.00[EUR][1000 genomes]
rs898412	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs898413	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs898414	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9311511	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1001128	chr3:53659570-53927842	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1013783	chr3:53694418-53934781	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53683200-53744200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:53715600-53739600	Weak transcription	Brain Anterior Caudate	brain
3	chr3:53717200-53726600	Weak transcription	Fetal Intestine Large	intestine
4	chr3:53717200-53727200	Weak transcription	Fetal Lung	lung
5	chr3:53721000-53739800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:53722200-53723600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:53722200-53725400	Strong transcription	Fetal Intestine Small	intestine
8	chr3:53723000-53724200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr3:53723000-53724400	Enhancers	Placenta	Placenta
10	chr3:53723200-53723600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:53723200-53724200	Weak transcription	Fetal Muscle Leg	muscle
12	chr3:53723200-53728200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:53723200-53743400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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