Variant report

Variant	rs2681697
Chromosome Location	chr3:141500669-141500670
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11921607	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1467200	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1467201	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2138789	0.85[EUR][1000 genomes]
rs2677425	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2677426	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2681695	0.93[EUR][1000 genomes]
rs2681701	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2946933	0.87[EUR][1000 genomes]
rs4586785	1.00[CHB][hapmap]
rs4588340	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141472000-141500800	Weak transcription	Thymus	Thymus
2	chr3:141497800-141505800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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