Variant report

Variant	rs11921607
Chromosome Location	chr3:141512513-141512514
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141510389..141512648-chr3:141516090..141517721,2	K562	blood:
2	chr3:141511387..141514014-chr3:141597034..141598647,2	K562	blood:
3	chr3:141512385..141514175-chr3:141514363..141516660,2	MCF-7	breast:
4	chr3:141499460..141502313-chr3:141511954..141514194,2	K562	blood:
5	chr3:141510800..141513086-chr3:141522997..141525044,2	K562	blood:
6	chr3:141509290..141512769-chr3:141513263..141515246,3	K562	blood:
7	chr3:141510432..141513238-chr3:141595470..141596991,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1467200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1467201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1467202	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2138789	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2677425	0.83[EUR][1000 genomes]
rs2677426	1.00[CEU][hapmap];0.81[YRI][hapmap];0.88[EUR][1000 genomes]
rs2681695	0.86[EUR][1000 genomes]
rs2681697	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2681701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2946933	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9835566	0.91[LWK][hapmap];0.88[MKK][hapmap];0.94[YRI][hapmap]
rs9881983	1.00[YRI][hapmap];0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11921607	TFDP2	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141504200-141512800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:141510400-141515400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr3:141511800-141514400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:141511800-141514800	Enhancers	Thymus	Thymus
5	chr3:141511800-141515200	Enhancers	Fetal Thymus	thymus
6	chr3:141512200-141514000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:141512400-141513200	Enhancers	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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