Variant report

Variant	rs9835566
Chromosome Location	chr3:141500037-141500038
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11920081	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs11921607	0.91[LWK][hapmap];0.88[MKK][hapmap];0.94[YRI][hapmap]
rs1467200	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs1467201	0.94[YRI][hapmap];0.86[AFR][1000 genomes]
rs2677426	0.85[YRI][hapmap]
rs2681701	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs2861381	0.92[CEU][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs2946933	0.82[AFR][1000 genomes]
rs4234469	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4337623	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4683627	0.82[EUR][1000 genomes]
rs7625423	0.87[EUR][1000 genomes]
rs7637770	0.87[EUR][1000 genomes]
rs9819437	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9835447	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9842184	0.84[EUR][1000 genomes]
rs9881983	0.95[CEU][hapmap];0.82[JPT][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs9835566	RBP2	cis	parietal	SCAN
rs9835566	RASA2	cis	parietal	SCAN
rs9835566	TFDP2	cis	cerebellum	SCAN
rs9835566	RNF7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141472000-141500800	Weak transcription	Thymus	Thymus
2	chr3:141497800-141505800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links