Variant report

Variant	rs4234469
Chromosome Location	chr3:141519409-141519410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11920081	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs2861381	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs4234468	0.94[CHB][hapmap];0.84[ASN][1000 genomes]
rs4337623	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4683409	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs4683627	0.82[EUR][1000 genomes]
rs56358931	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6806847	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs7625423	0.87[EUR][1000 genomes]
rs7637770	0.87[EUR][1000 genomes]
rs9819437	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9835447	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9835566	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9842184	0.87[EUR][1000 genomes]
rs9859089	0.84[ASN][1000 genomes]
rs9881983	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4234469	RNF7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141516800-141523400	Weak transcription	Fetal Brain Male	brain
2	chr3:141517000-141523400	Weak transcription	Gastric	stomach
3	chr3:141517200-141523400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:141517800-141521000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr3:141517800-141523400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:141517800-141523400	Weak transcription	Fetal Kidney	kidney
7	chr3:141517800-141523600	Weak transcription	Pancreas	Pancrea
8	chr3:141518000-141523400	Weak transcription	Esophagus	oesophagus
9	chr3:141519200-141521000	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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