Variant report

Variant	rs6806847
Chromosome Location	chr3:141515136-141515137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141514623..141517093-chr3:141594365..141597102,3	K562	blood:
2	chr3:141512385..141514175-chr3:141514363..141516660,2	MCF-7	breast:
3	chr3:141509966..141511631-chr3:141513470..141515966,2	MCF-7	breast:
4	chr3:141509290..141512769-chr3:141513263..141515246,3	K562	blood:

Variant related genes	Relation type
ENSG00000069849	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13317804	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2030183	0.84[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2677433	0.92[EUR][1000 genomes]
rs2677434	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2681696	0.94[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2681698	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs4234468	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4234469	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs4327361	0.81[EUR][1000 genomes]
rs4447734	1.00[CEU][hapmap]
rs4594596	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4683409	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs4683625	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56358931	0.96[ASN][1000 genomes]
rs6440037	0.91[EUR][1000 genomes]
rs7615804	0.91[EUR][1000 genomes]
rs7616846	0.84[CEU][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7630190	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9831276	1.00[CEU][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9859089	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141510400-141515400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:141511800-141515200	Enhancers	Fetal Thymus	thymus
3	chr3:141512600-141515200	Enhancers	Primary T cells fromperipheralblood	blood
4	chr3:141512600-141515200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr3:141512800-141515200	Enhancers	Primary T cells from cord blood	blood
6	chr3:141512800-141515200	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr3:141512800-141515200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr3:141512800-141515200	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr3:141512800-141515200	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr3:141512800-141515200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr3:141512800-141515200	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr3:141512800-141515800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr3:141512800-141516400	Enhancers	Primary hematopoietic stem cells	blood
14	chr3:141513000-141515200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr3:141513000-141515200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr3:141513200-141516000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr3:141513600-141517800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr3:141513800-141515800	Enhancers	Fetal Muscle Leg	muscle
19	chr3:141513800-141516200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr3:141513800-141516200	Enhancers	Esophagus	oesophagus
21	chr3:141513800-141517000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr3:141514000-141515200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:141514000-141517800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:141514200-141515200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr3:141514200-141515600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:141514200-141515600	Enhancers	HSMM	muscle
27	chr3:141514200-141515800	Enhancers	Fetal Muscle Trunk	muscle
28	chr3:141514200-141516000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr3:141514200-141516000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr3:141514200-141516000	Enhancers	Placenta	Placenta
31	chr3:141514200-141516400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr3:141514200-141517200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr3:141514200-141517600	Flanking Active TSS	Dnd41	blood
34	chr3:141514400-141515200	Enhancers	Colon Smooth Muscle	Colon
35	chr3:141514400-141515200	Enhancers	Duodenum Mucosa	Duodenum
36	chr3:141514400-141515400	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr3:141514400-141515400	Enhancers	Primary B cells from cord blood	blood
38	chr3:141514600-141515200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr3:141514600-141515200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr3:141514600-141515800	Enhancers	Rectal Smooth Muscle	rectum
41	chr3:141514600-141516000	Enhancers	K562	blood
42	chr3:141514600-141516200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr3:141514600-141517600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
44	chr3:141514800-141515200	Enhancers	Fetal Lung	lung
45	chr3:141514800-141515200	Enhancers	NHDF-Ad	bronchial
46	chr3:141514800-141515400	Enhancers	GM12878-XiMat	blood
47	chr3:141514800-141515600	Enhancers	NHEK	skin
48	chr3:141514800-141515800	Enhancers	Primary B cells from peripheral blood	blood
49	chr3:141514800-141516000	Enhancers	Fetal Stomach	stomach
50	chr3:141514800-141516000	Flanking Active TSS	Thymus	Thymus

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