Variant report

Variant	rs2677433
Chromosome Location	chr3:141509017-141509018
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs13317804	0.87[EUR][1000 genomes]
rs2030183	0.80[EUR][1000 genomes]
rs2677434	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2681696	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2681698	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4234468	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4327361	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4594596	0.87[EUR][1000 genomes]
rs4683625	0.87[EUR][1000 genomes]
rs6440037	0.85[EUR][1000 genomes]
rs6806847	0.92[EUR][1000 genomes]
rs7615804	0.85[EUR][1000 genomes]
rs7630190	0.80[EUR][1000 genomes]
rs9831276	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9859089	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141504200-141512800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:141508200-141509800	Enhancers	K562	blood
3	chr3:141508600-141511800	Weak transcription	Thymus	Thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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