Variant report

Variant	rs9831276
Chromosome Location	chr3:141513023-141513024
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141511387..141514014-chr3:141597034..141598647,2	K562	blood:
2	chr3:141512385..141514175-chr3:141514363..141516660,2	MCF-7	breast:
3	chr3:141499460..141502313-chr3:141511954..141514194,2	K562	blood:
4	chr3:141510800..141513086-chr3:141522997..141525044,2	K562	blood:
5	chr3:141510432..141513238-chr3:141595470..141596991,2	K562	blood:

Variant related genes	Relation type
ENSG00000069849	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13317804	0.88[EUR][1000 genomes]
rs2030183	0.84[CEU][hapmap]
rs2677433	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2677434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2681696	0.94[CEU][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2681698	0.94[CEU][hapmap];0.90[CHD][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34480341	0.81[AFR][1000 genomes]
rs4234468	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];0.86[TSI][hapmap];0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4327361	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4447734	1.00[CEU][hapmap];0.81[TSI][hapmap]
rs4594596	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4683625	0.88[EUR][1000 genomes]
rs6440037	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6806847	1.00[CEU][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7615804	0.85[EUR][1000 genomes]
rs7616846	0.84[CEU][hapmap];0.85[MEX][hapmap]
rs9859089	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9831276	ACPL2	cis	cerebellum	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141510400-141515400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:141511800-141514400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr3:141511800-141514800	Enhancers	Thymus	Thymus
4	chr3:141511800-141515200	Enhancers	Fetal Thymus	thymus
5	chr3:141512200-141514000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:141512400-141513200	Enhancers	Fetal Muscle Trunk	muscle
7	chr3:141512600-141514800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:141512600-141514800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:141512600-141515200	Enhancers	Primary T cells fromperipheralblood	blood
10	chr3:141512600-141515200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr3:141512800-141515200	Enhancers	Primary T cells from cord blood	blood
12	chr3:141512800-141515200	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr3:141512800-141515200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr3:141512800-141515200	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr3:141512800-141515200	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr3:141512800-141515200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr3:141512800-141515200	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr3:141512800-141515800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr3:141512800-141516400	Enhancers	Primary hematopoietic stem cells	blood
20	chr3:141513000-141513400	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr3:141513000-141513800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr3:141513000-141513800	Enhancers	Spleen	Spleen
23	chr3:141513000-141515000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr3:141513000-141515200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr3:141513000-141515200	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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