Variant report

Variant	rs4594596
Chromosome Location	chr3:141527903-141527904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13317804	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2030183	0.82[EUR][1000 genomes]
rs2677433	0.87[EUR][1000 genomes]
rs2677434	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2681696	0.85[EUR][1000 genomes]
rs2681698	0.86[EUR][1000 genomes]
rs34357486	0.85[EUR][1000 genomes]
rs34480341	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4234468	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4683625	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6440037	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6806847	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7615804	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7616846	0.81[EUR][1000 genomes]
rs7630190	0.82[EUR][1000 genomes]
rs9831276	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9859089	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141523800-141530400	Weak transcription	Fetal Brain Male	brain
2	chr3:141524800-141529800	Weak transcription	Fetal Muscle Leg	muscle
3	chr3:141526200-141528000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:141526800-141530600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:141526800-141531200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:141527000-141530200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:141527400-141528000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr3:141527400-141528200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr3:141527600-141528200	Enhancers	Primary hematopoietic stem cells	blood
10	chr3:141527800-141529200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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