Variant report

Variant	rs34357486
Chromosome Location	chr3:141547336-141547337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141545797..141548193-chr3:141553197..141554756,2	MCF-7	breast:
2	chr3:141455754..141459793-chr3:141546409..141549893,5	MCF-7	breast:
3	chr3:141546349..141549180-chr3:141595509..141597123,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114125	Chromatin interaction
ENSG00000069849	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13317804	0.85[EUR][1000 genomes]
rs34480341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4234468	0.82[EUR][1000 genomes]
rs4594596	0.85[EUR][1000 genomes]
rs4683625	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6440037	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7615804	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9859089	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141534800-141547800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:141544800-141547800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:141544800-141547800	Weak transcription	Adipose Nuclei	Adipose
4	chr3:141544800-141547800	Weak transcription	Esophagus	oesophagus
5	chr3:141544800-141550800	Weak transcription	Right Atrium	heart
6	chr3:141545000-141547800	Weak transcription	Psoas Muscle	Psoas
7	chr3:141546000-141548200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:141546200-141548400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr3:141546400-141548400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr3:141546800-141548000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr3:141547000-141547600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:141547000-141548000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:141547000-141548200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr3:141547000-141548200	Enhancers	Rectal Mucosa Donor 29	rectum
15	chr3:141547000-141548200	Enhancers	K562	blood
16	chr3:141547000-141548400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr3:141547000-141548400	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr3:141547000-141549000	Enhancers	NHEK	skin
19	chr3:141547000-141550600	Enhancers	Hela-S3	cervix
20	chr3:141547200-141547600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr3:141547200-141548000	Enhancers	H9 Cell Line	embryonic stem cell
22	chr3:141547200-141548000	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr3:141547200-141548000	Enhancers	HSMM	muscle
24	chr3:141547200-141548200	Enhancers	Fetal Muscle Leg	muscle
25	chr3:141547200-141548200	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr3:141547200-141548400	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr3:141547200-141548400	Enhancers	HSMMtube	muscle
28	chr3:141547200-141548600	Enhancers	Placenta	Placenta
29	chr3:141547200-141548800	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr3:141547200-141549400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr3:141547200-141550000	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr3:141547200-141550600	Enhancers	HMEC	breast

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