Variant report

Variant	rs4683625
Chromosome Location	chr3:141530810-141530811
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13317804	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2030183	0.84[CEU][hapmap];0.80[TSI][hapmap];0.82[EUR][1000 genomes]
rs2677433	0.87[EUR][1000 genomes]
rs2677434	0.87[EUR][1000 genomes]
rs2681696	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs2681698	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs34357486	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34480341	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4234468	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4447734	1.00[CEU][hapmap]
rs4594596	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6440037	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6806847	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7615804	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7616846	0.84[CEU][hapmap];0.80[TSI][hapmap];0.81[EUR][1000 genomes]
rs7630190	0.82[EUR][1000 genomes]
rs9831276	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MKK][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes]
rs9859089	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4683625	ACPL2	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141526800-141531200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:141529800-141531800	Enhancers	Fetal Muscle Leg	muscle
3	chr3:141530000-141531600	Enhancers	Fetal Stomach	stomach
4	chr3:141530200-141531600	Enhancers	Fetal Brain Female	brain
5	chr3:141530200-141531800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:141530400-141531400	Enhancers	Fetal Brain Male	brain
7	chr3:141530400-141531600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr3:141530600-141531600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:141530800-141531400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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