Variant report

Variant	rs2677434
Chromosome Location	chr3:141512719-141512720
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13317804	0.87[EUR][1000 genomes]
rs2030183	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs2677433	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2681696	0.94[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2681698	0.94[CEU][hapmap];0.90[CHD][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34480341	0.81[AFR][1000 genomes]
rs4234468	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];0.86[TSI][hapmap];0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4327361	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4447734	1.00[CEU][hapmap];0.81[TSI][hapmap]
rs4594596	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4683625	0.87[EUR][1000 genomes]
rs6440037	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6806847	1.00[CEU][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7615804	0.85[EUR][1000 genomes]
rs7616846	0.84[CEU][hapmap];0.85[MEX][hapmap]
rs7630190	0.80[EUR][1000 genomes]
rs9831276	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9859089	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2677434	ACPL2	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141504200-141512800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:141510400-141515400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr3:141511800-141514400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:141511800-141514800	Enhancers	Thymus	Thymus
5	chr3:141511800-141515200	Enhancers	Fetal Thymus	thymus
6	chr3:141512200-141514000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:141512400-141513200	Enhancers	Fetal Muscle Trunk	muscle
8	chr3:141512600-141514800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:141512600-141514800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:141512600-141515200	Enhancers	Primary T cells fromperipheralblood	blood
11	chr3:141512600-141515200	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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