Variant report

Variant	rs2681747
Chromosome Location	chr14:72815787-72815788
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72806003..72809528-chr14:72813549..72815955,3	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10129799	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10137579	0.90[ASN][1000 genomes]
rs10138152	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1072166	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1099968	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1356841	0.81[EUR][1000 genomes]
rs1356843	0.81[EUR][1000 genomes]
rs1812041	0.81[EUR][1000 genomes]
rs2176841	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2190508	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2214965	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2239229	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2239230	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2239232	0.81[EUR][1000 genomes]
rs2239234	0.81[EUR][1000 genomes]
rs2247090	0.81[EUR][1000 genomes]
rs2283385	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2332832	0.90[ASN][1000 genomes]
rs2529457	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2529467	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2529468	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2529470	0.81[EUR][1000 genomes]
rs2529471	0.81[EUR][1000 genomes]
rs2681727	0.81[EUR][1000 genomes]
rs2681731	0.81[EUR][1000 genomes]
rs2681734	0.81[EUR][1000 genomes]
rs2681741	0.81[EUR][1000 genomes]
rs2681743	0.81[EUR][1000 genomes]
rs2681744	0.81[EUR][1000 genomes]
rs2681745	0.80[EUR][1000 genomes]
rs2681749	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2681751	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2681752	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2681753	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2681757	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7140973	0.90[ASN][1000 genomes]
rs7150465	0.89[ASN][1000 genomes]
rs7151325	0.90[ASN][1000 genomes]
rs886826	0.81[EUR][1000 genomes]
rs929413	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	esv2757573	chr14:72802736-72819684	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2759995	chr14:72802736-72819684	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72814200-72818600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:72814800-72818400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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