Variant report

Variant	rs2681752
Chromosome Location	chr14:72817160-72817161
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10129799	1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10137579	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10138152	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1072166	1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1099968	1.00[CHB][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1356841	0.88[EUR][1000 genomes]
rs1356843	0.95[EUR][1000 genomes]
rs1812041	0.95[EUR][1000 genomes]
rs1915132	0.93[EUR][1000 genomes]
rs2079504	0.93[EUR][1000 genomes]
rs2079505	0.93[EUR][1000 genomes]
rs2079506	0.92[EUR][1000 genomes]
rs2176841	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2190508	1.00[CHB][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2214965	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2239224	0.83[YRI][hapmap]
rs2239227	0.83[JPT][hapmap]
rs2239229	1.00[CHB][hapmap];0.85[JPT][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2239230	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2239231	0.80[EUR][1000 genomes]
rs2239232	0.95[EUR][1000 genomes]
rs2239234	0.95[EUR][1000 genomes]
rs2239235	0.93[EUR][1000 genomes]
rs2239238	0.93[EUR][1000 genomes]
rs2239239	0.93[EUR][1000 genomes]
rs2239241	0.93[EUR][1000 genomes]
rs2239243	0.93[EUR][1000 genomes]
rs2247090	0.95[EUR][1000 genomes]
rs2283385	1.00[CHB][hapmap];0.85[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2283388	0.92[EUR][1000 genomes]
rs2332831	0.82[YRI][hapmap]
rs2332832	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2529457	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2529466	1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs2529467	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2529468	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2529470	0.95[EUR][1000 genomes]
rs2529471	0.95[EUR][1000 genomes]
rs2681727	0.95[EUR][1000 genomes]
rs2681728	1.00[YRI][hapmap]
rs2681730	0.91[EUR][1000 genomes]
rs2681731	0.95[EUR][1000 genomes]
rs2681733	0.91[EUR][1000 genomes]
rs2681734	0.95[EUR][1000 genomes]
rs2681735	0.90[EUR][1000 genomes]
rs2681736	0.91[EUR][1000 genomes]
rs2681741	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs2681743	1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs2681744	0.96[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs2681745	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs2681746	0.84[EUR][1000 genomes]
rs2681747	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2681749	1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2681751	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2681753	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2681754	1.00[YRI][hapmap]
rs2681757	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2681761	1.00[YRI][hapmap]
rs2681767	0.93[EUR][1000 genomes]
rs2681768	0.93[EUR][1000 genomes]
rs2681769	0.93[EUR][1000 genomes]
rs2681771	0.93[EUR][1000 genomes]
rs7140973	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7150465	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7151325	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8003559	0.93[EUR][1000 genomes]
rs8003591	0.93[EUR][1000 genomes]
rs8015917	0.91[EUR][1000 genomes]
rs8019358	0.93[EUR][1000 genomes]
rs8019371	0.85[EUR][1000 genomes]
rs8022859	0.93[EUR][1000 genomes]
rs8022956	0.93[EUR][1000 genomes]
rs847326	1.00[YRI][hapmap]
rs847327	1.00[YRI][hapmap]
rs847332	1.00[YRI][hapmap]
rs847333	1.00[YRI][hapmap]
rs886826	0.95[EUR][1000 genomes]
rs929413	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	esv2757573	chr14:72802736-72819684	Weak transcription ZNF genes & repeats Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2759995	chr14:72802736-72819684	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72814200-72818600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:72814800-72818400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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