Variant report

Variant	rs2682870
Chromosome Location	chr2:187538346-187538347
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:187538048..187541049-chr7:7133355..7136702,3	MCF-7	breast:
2	chr2:187530345..187532504-chr2:187536988..187538973,2	K562	blood:

Variant related genes	Relation type
ENSG00000138448	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1375447	1.00[CHB][hapmap];0.91[CHD][hapmap];0.91[MEX][hapmap]
rs1449088	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs1449090	1.00[CHB][hapmap]
rs1449091	1.00[CHB][hapmap];0.91[CHD][hapmap];0.91[MEX][hapmap]
rs1470602	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs16828026	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16828108	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs16828136	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1839122	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2167013	1.00[CHB][hapmap]
rs2247924	1.00[CHB][hapmap];0.91[CHD][hapmap];0.91[MEX][hapmap];0.86[MKK][hapmap]
rs2594698	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2594702	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2594703	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2594704	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2595377	1.00[CHB][hapmap]
rs2595379	1.00[CHB][hapmap];0.89[CHD][hapmap];0.89[MEX][hapmap]
rs2682852	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2682853	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2682854	0.85[ASN][1000 genomes]
rs2682858	1.00[CHB][hapmap]
rs2682861	1.00[CHB][hapmap];0.91[CHD][hapmap];0.91[MEX][hapmap]
rs2682866	0.85[ASN][1000 genomes]
rs2682869	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2682872	0.85[ASN][1000 genomes]
rs2682874	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs3738918	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3754584	1.00[CHB][hapmap]
rs6761687	1.00[CHB][hapmap]
rs7556971	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs976693	1.00[CHB][hapmap];0.91[CHD][hapmap];0.91[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757844	chr2:187332780-187580547	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2759107	chr2:187332780-187580547	Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187501000-187548400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:187503400-187545000	Weak transcription	Hela-S3	cervix
3	chr2:187507800-187546600	Weak transcription	Small Intestine	intestine
4	chr2:187511400-187546600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr2:187511600-187545000	Strong transcription	Osteobl	bone
6	chr2:187513800-187546800	Strong transcription	NH-A	brain
7	chr2:187514600-187546200	Strong transcription	Placenta	Placenta
8	chr2:187516400-187543600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:187516600-187545400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr2:187518800-187547200	Strong transcription	HUVEC	blood vessel
11	chr2:187520000-187545000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr2:187523000-187546800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr2:187525000-187543200	Weak transcription	Thymus	Thymus
14	chr2:187525400-187541800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr2:187527600-187543600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr2:187527600-187546400	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr2:187527800-187542000	Strong transcription	Skeletal Muscle Male	skeletal muscle
18	chr2:187527800-187542000	Strong transcription	HMEC	breast
19	chr2:187527800-187544200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr2:187528000-187543200	Strong transcription	Duodenum Smooth Muscle	Duodenum
21	chr2:187528000-187544000	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr2:187528000-187544600	Strong transcription	HSMM	muscle
23	chr2:187528000-187548000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr2:187528200-187543600	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr2:187528400-187542600	Strong transcription	Muscle Satellite Cultured Cells	--
26	chr2:187528600-187543600	Strong transcription	Rectal Mucosa Donor 31	rectum
27	chr2:187528800-187539400	Strong transcription	HSMMtube	muscle
28	chr2:187529000-187541600	Strong transcription	Fetal Thymus	thymus
29	chr2:187529000-187542400	Strong transcription	Stomach Smooth Muscle	stomach
30	chr2:187529000-187548200	Weak transcription	Stomach Mucosa	stomach
31	chr2:187529200-187540600	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr2:187529200-187541800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr2:187529200-187541800	Strong transcription	Left Ventricle	heart
34	chr2:187529200-187542000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr2:187529200-187542200	Strong transcription	Ovary	ovary
36	chr2:187529200-187542600	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr2:187531800-187541800	Strong transcription	Sigmoid Colon	Sigmoid Colon
38	chr2:187531800-187543600	Strong transcription	Fetal Lung	lung
39	chr2:187532000-187540800	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr2:187533000-187539800	Strong transcription	Brain Cingulate Gyrus	brain
41	chr2:187533200-187539200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr2:187533200-187539600	Strong transcription	Fetal Stomach	stomach
43	chr2:187533200-187543600	Strong transcription	Skeletal Muscle Female	skeletal muscle
44	chr2:187533400-187538400	Strong transcription	NHDF-Ad	bronchial
45	chr2:187533400-187539200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr2:187533400-187540200	Strong transcription	Placenta Amnion	Placenta Amnion
47	chr2:187533600-187538600	Strong transcription	Rectal Smooth Muscle	rectum
48	chr2:187533600-187541400	Strong transcription	Colon Smooth Muscle	Colon
49	chr2:187534400-187542200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr2:187535200-187540400	Strong transcription	K562	blood

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