Variant report

Variant	rs2682861
Chromosome Location	chr2:187601179-187601180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1349170	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1375447	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1449088	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1449090	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1449091	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1470602	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs16828026	1.00[CHB][hapmap]
rs16828108	1.00[CHB][hapmap]
rs1839122	1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2122177	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2167013	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2247924	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442316	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2442318	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2594702	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2594703	1.00[ASW][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2594704	0.92[ASW][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2595377	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2595379	0.92[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2595388	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2682852	0.84[AMR][1000 genomes]
rs2682853	0.81[AMR][1000 genomes]
rs2682854	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2682858	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2682859	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2682860	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2682866	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2682869	0.84[AMR][1000 genomes]
rs2682870	1.00[CHB][hapmap];0.91[CHD][hapmap];0.91[MEX][hapmap]
rs2682872	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2682874	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3738918	1.00[CHB][hapmap];0.91[CHD][hapmap]
rs3754584	1.00[CHB][hapmap]
rs4309547	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57306419	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59855103	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6761687	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73035695	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7556971	1.00[CHB][hapmap]
rs976693	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428069	chr2:187575692-187766209	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187592200-187618600	Weak transcription	Osteobl	bone
2	chr2:187595200-187602600	Weak transcription	Brain Anterior Caudate	brain
3	chr2:187596600-187611400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr2:187596600-187626200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr2:187598600-187621200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:187599000-187601800	Weak transcription	Ovary	ovary
7	chr2:187599200-187601200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr2:187599600-187601200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr2:187599600-187631000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr2:187599800-187601200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr2:187600000-187601200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr2:187600000-187601800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr2:187600000-187602200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr2:187600000-187602600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr2:187600000-187613200	Weak transcription	Pancreas	Pancrea
16	chr2:187600200-187601800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr2:187600200-187602600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr2:187600200-187611000	Weak transcription	Brain Angular Gyrus	brain
19	chr2:187600600-187601200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr2:187600600-187601600	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr2:187601000-187601800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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