Variant report

Variant	rs59855103
Chromosome Location	chr2:187641501-187641502
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1349170	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1375447	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1449088	1.00[EUR][1000 genomes]
rs1449090	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1449091	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1839122	1.00[EUR][1000 genomes]
rs2122177	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2167013	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2247924	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2442316	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2442318	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2594702	1.00[EUR][1000 genomes]
rs2594703	1.00[EUR][1000 genomes]
rs2594704	1.00[EUR][1000 genomes]
rs2595377	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2595379	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2595388	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2682854	1.00[EUR][1000 genomes]
rs2682858	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2682859	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2682860	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2682861	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2682866	1.00[EUR][1000 genomes]
rs2682872	1.00[EUR][1000 genomes]
rs2682874	1.00[EUR][1000 genomes]
rs4309547	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57306419	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6761687	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73035695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs976693	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428069	chr2:187575692-187766209	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3495864	chr2:187633495-187686087	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3495865	chr2:187633495-187686087	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187637600-187643800	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links