Variant report

Variant	rs2683534
Chromosome Location	chr3:24201505-24201506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24196174..24198881-chr3:24200287..24202945,2	MCF-7	breast:
2	chr3:24195944..24197573-chr3:24200663..24202701,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1470661	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2067499	0.80[AMR][1000 genomes]
rs2596618	0.91[ASN][1000 genomes]
rs2596620	0.84[AMR][1000 genomes]
rs2596621	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2596625	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2683533	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2683545	0.85[AMR][1000 genomes]
rs6777133	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24180000-24206600	Weak transcription	Pancreas	Pancrea
2	chr3:24186200-24230800	Weak transcription	Fetal Intestine Large	intestine
3	chr3:24188000-24202200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr3:24188200-24201600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:24188200-24203400	Weak transcription	Right Atrium	heart
6	chr3:24188200-24203600	Weak transcription	Liver	Liver
7	chr3:24188200-24210000	Weak transcription	Gastric	stomach
8	chr3:24188200-24215200	Weak transcription	Right Ventricle	heart
9	chr3:24190800-24202400	Weak transcription	Adipose Nuclei	Adipose
10	chr3:24192800-24202200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr3:24194000-24202200	Weak transcription	Fetal Lung	lung
12	chr3:24194000-24202200	Weak transcription	Ovary	ovary
13	chr3:24194000-24203000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr3:24195600-24202200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:24196200-24201800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr3:24197400-24203000	Weak transcription	Aorta	Aorta
17	chr3:24198000-24202200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr3:24198400-24202200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr3:24198600-24202200	Weak transcription	NHLF	lung
20	chr3:24198800-24201600	Weak transcription	Placenta	Placenta
21	chr3:24198800-24201800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:24198800-24203000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr3:24198800-24203400	Weak transcription	Psoas Muscle	Psoas
24	chr3:24198800-24203600	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr3:24198800-24218800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr3:24199000-24201600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr3:24199000-24202200	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr3:24199200-24201800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr3:24199400-24225800	Weak transcription	Fetal Intestine Small	intestine
30	chr3:24199800-24203600	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr3:24200200-24201800	Weak transcription	Lung	lung
32	chr3:24200800-24201600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr3:24200800-24202200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr3:24200800-24202400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr3:24201400-24202800	Enhancers	Spleen	Spleen

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