Variant report

Variant	rs6777133
Chromosome Location	chr3:24202111-24202112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24196174..24198881-chr3:24200287..24202945,2	MCF-7	breast:
2	chr3:24191569..24194138-chr3:24202031..24204441,2	K562	blood:
3	chr3:24195944..24197573-chr3:24200663..24202701,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2596625	0.82[MEX][hapmap]
rs2683528	0.84[AMR][1000 genomes]
rs2683529	0.84[AMR][1000 genomes]
rs2683534	0.80[AMR][1000 genomes]
rs2683536	0.82[GIH][hapmap];0.91[MEX][hapmap];0.84[AMR][1000 genomes]
rs62255847	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24180000-24206600	Weak transcription	Pancreas	Pancrea
2	chr3:24186200-24230800	Weak transcription	Fetal Intestine Large	intestine
3	chr3:24188000-24202200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr3:24188200-24203400	Weak transcription	Right Atrium	heart
5	chr3:24188200-24203600	Weak transcription	Liver	Liver
6	chr3:24188200-24210000	Weak transcription	Gastric	stomach
7	chr3:24188200-24215200	Weak transcription	Right Ventricle	heart
8	chr3:24190800-24202400	Weak transcription	Adipose Nuclei	Adipose
9	chr3:24192800-24202200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr3:24194000-24202200	Weak transcription	Fetal Lung	lung
11	chr3:24194000-24202200	Weak transcription	Ovary	ovary
12	chr3:24194000-24203000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr3:24195600-24202200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:24197400-24203000	Weak transcription	Aorta	Aorta
15	chr3:24198000-24202200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr3:24198400-24202200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr3:24198600-24202200	Weak transcription	NHLF	lung
18	chr3:24198800-24203000	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr3:24198800-24203400	Weak transcription	Psoas Muscle	Psoas
20	chr3:24198800-24203600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr3:24198800-24218800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:24199000-24202200	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr3:24199400-24225800	Weak transcription	Fetal Intestine Small	intestine
24	chr3:24199800-24203600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr3:24200800-24202200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr3:24200800-24202400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr3:24201400-24202800	Enhancers	Spleen	Spleen
28	chr3:24201600-24202400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr3:24201600-24202400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr3:24201600-24202400	Enhancers	Placenta	Placenta
31	chr3:24201600-24203600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr3:24201600-24204000	Enhancers	H9 Cell Line	embryonic stem cell
33	chr3:24201800-24202200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr3:24201800-24202400	Enhancers	Lung	lung
35	chr3:24201800-24202600	Enhancers	Brain Anterior Caudate	brain
36	chr3:24201800-24204200	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr3:24202000-24202400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr3:24202000-24202600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr3:24202000-24202800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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