Variant report

Variant	rs2688429
Chromosome Location	chr7:140657390-140657391
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140651075..140654377-chr7:140654962..140660080,4	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10271387	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10279193	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1091374	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1091375	0.93[EUR][1000 genomes]
rs12534351	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12534354	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1860481	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2079829	1.00[ASN][1000 genomes]
rs246738	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs246740	1.00[ASN][1000 genomes]
rs246741	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs246742	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs246743	1.00[ASN][1000 genomes]
rs246744	1.00[ASN][1000 genomes]
rs2533300	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2533307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2533308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688431	0.90[EUR][1000 genomes]
rs2688432	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3844322	1.00[ASN][1000 genomes]
rs38716	1.00[ASN][1000 genomes]
rs38725	1.00[ASN][1000 genomes]
rs38727	1.00[ASN][1000 genomes]
rs38728	1.00[ASN][1000 genomes]
rs38729	1.00[ASN][1000 genomes]
rs38737	1.00[ASN][1000 genomes]
rs4020017	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4020018	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4726134	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6949856	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6950813	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs71645926	1.00[ASN][1000 genomes]
rs7778860	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7782666	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs801095	0.93[EUR][1000 genomes]
rs801096	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs801097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9640306	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017980	chr7:140601863-140721368	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1030195	chr7:140615828-140746345	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1026448	chr7:140636599-140716829	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140657200-140669000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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