Variant report

Variant	rs4020018
Chromosome Location	chr7:140648206-140648207
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140624123..140626561-chr7:140646609..140648992,2	K562	blood:

Variant related genes	Relation type
ENSG00000157764	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10271387	1.00[ASN][1000 genomes]
rs10279193	1.00[ASN][1000 genomes]
rs1091374	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1091375	0.86[EUR][1000 genomes]
rs12534351	1.00[ASN][1000 genomes]
rs12534354	1.00[ASN][1000 genomes]
rs1860481	1.00[ASN][1000 genomes]
rs2079829	1.00[ASN][1000 genomes]
rs246738	1.00[ASN][1000 genomes]
rs246740	1.00[ASN][1000 genomes]
rs246741	1.00[ASN][1000 genomes]
rs246742	1.00[ASN][1000 genomes]
rs246743	1.00[ASN][1000 genomes]
rs246744	1.00[ASN][1000 genomes]
rs2533300	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2533307	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2533308	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688429	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2688431	0.83[EUR][1000 genomes]
rs2688432	0.93[EUR][1000 genomes]
rs3844322	1.00[ASN][1000 genomes]
rs38716	1.00[ASN][1000 genomes]
rs38725	1.00[ASN][1000 genomes]
rs38727	1.00[ASN][1000 genomes]
rs38728	1.00[ASN][1000 genomes]
rs38729	1.00[ASN][1000 genomes]
rs38737	1.00[ASN][1000 genomes]
rs4020017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4726134	1.00[ASN][1000 genomes]
rs6949856	1.00[ASN][1000 genomes]
rs6950813	1.00[ASN][1000 genomes]
rs71645926	1.00[ASN][1000 genomes]
rs7778860	1.00[ASN][1000 genomes]
rs7782666	1.00[ASN][1000 genomes]
rs801095	0.86[EUR][1000 genomes]
rs801096	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs801097	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9640306	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017980	chr7:140601863-140721368	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1030195	chr7:140615828-140746345	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1026448	chr7:140636599-140716829	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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