Variant report

Variant rs2688475
Chromosome Location chr3:195459530-195459531
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:195439000-195465200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
2 chr3:195442200-195475000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
3 chr3:195442400-195468200 Weak transcription Primary T helper naive cells from peripheral blood blood
4 chr3:195442600-195474200 Weak transcription Primary T helper naive cells fromperipheralblood blood
5 chr3:195442800-195461600 Weak transcription Primary T helper cells fromperipheralblood blood
6 chr3:195442800-195475000 Weak transcription Brain Substantia Nigra brain
7 chr3:195443000-195459800 Weak transcription Colon Smooth Muscle Colon
8 chr3:195443000-195468000 Weak transcription Primary T helper cells PMA-I stimulated --
9 chr3:195448200-195459800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
10 chr3:195448200-195460800 Weak transcription Pancreatic Islets Pancreatic Islet
11 chr3:195448200-195483800 Weak transcription Placenta Amnion Placenta Amnion
12 chr3:195454400-195459800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
13 chr3:195454600-195460000 Weak transcription Primary T regulatory cells fromperipheralblood blood
14 chr3:195454800-195459800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr3:195454800-195462000 Weak transcription Gastric stomach
16 chr3:195455000-195459800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
17 chr3:195455000-195460000 Weak transcription Stomach Smooth Muscle stomach
18 chr3:195456200-195459800 Weak transcription Left Ventricle heart
19 chr3:195456400-195460600 Strong transcription Brain Inferior Temporal Lobe brain
20 chr3:195456400-195460600 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
21 chr3:195456400-195460800 Strong transcription Primary T cells from cord blood blood
22 chr3:195456400-195460800 Strong transcription Brain Anterior Caudate brain
23 chr3:195456400-195460800 Strong transcription Brain Hippocampus Middle brain
24 chr3:195456400-195463600 Weak transcription Fetal Heart heart
25 chr3:195456400-195464200 Strong transcription Rectal Smooth Muscle rectum
26 chr3:195456400-195465600 Strong transcription Rectal Mucosa Donor 29 rectum
27 chr3:195456600-195460000 Strong transcription Fetal Stomach stomach
28 chr3:195456600-195460400 Strong transcription Skeletal Muscle Female skeletal muscle
29 chr3:195456600-195460600 Strong transcription Brain Angular Gyrus brain
30 chr3:195456600-195465000 Strong transcription Breast Myoepithelial Primary Cells Breast
31 chr3:195456800-195459800 Weak transcription Rectal Mucosa Donor 31 rectum
32 chr3:195456800-195460600 Strong transcription Colonic Mucosa Colon
33 chr3:195456800-195464000 Weak transcription Fetal Brain Male brain
34 chr3:195456800-195465600 Strong transcription Liver Liver
35 chr3:195457000-195462000 Weak transcription Aorta Aorta
36 chr3:195457200-195460000 Weak transcription Small Intestine intestine
37 chr3:195457200-195464600 Strong transcription Fetal Intestine Small intestine
38 chr3:195457400-195460800 Strong transcription Duodenum Mucosa Duodenum
39 chr3:195457800-195460600 Strong transcription Ovary ovary
40 chr3:195457800-195460600 Strong transcription Pancreas Pancrea
41 chr3:195457800-195462600 Strong transcription Sigmoid Colon Sigmoid Colon
42 chr3:195458200-195459600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
43 chr3:195458400-195459600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
44 chr3:195458400-195460000 Weak transcription Fetal Intestine Large intestine
45 chr3:195458400-195460600 Strong transcription Brain Cingulate Gyrus brain
46 chr3:195458600-195459600 Weak transcription Fetal Brain Female brain
47 chr3:195458600-195459800 Weak transcription Adipose Nuclei Adipose
48 chr3:195458600-195459800 Weak transcription Spleen Spleen
49 chr3:195458600-195460000 Weak transcription Duodenum Smooth Muscle Duodenum
50 chr3:195458600-195460000 Weak transcription Lung lung

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