Variant report

Variant	rs2688655
Chromosome Location	chr8:60966679-60966680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2681564	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs504673	0.82[EUR][1000 genomes]
rs551833	0.82[EUR][1000 genomes]
rs593206	0.90[ASN][1000 genomes]
rs609233	0.94[ASN][1000 genomes]
rs674687	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2688655	TOX	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60940000-60968400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:60964800-60968000	Weak transcription	Primary B cells from peripheral blood	blood
3	chr8:60964800-60968400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr8:60964800-60968400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr8:60964800-60969200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr8:60964800-60969400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr8:60964800-60969600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:60965000-60968200	Weak transcription	Primary B cells from cord blood	blood
9	chr8:60965200-60969400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr8:60965400-60969200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr8:60965600-60968000	Weak transcription	GM12878-XiMat	blood
12	chr8:60965600-60969200	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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