Variant report

Variant	rs2681564
Chromosome Location	chr8:60969930-60969931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:60962674..60964910-chr8:60968164..60970440,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1850971	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2681560	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2688653	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2688655	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs504673	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs551833	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs639377	0.93[EUR][1000 genomes]
rs640861	0.93[EUR][1000 genomes]
rs674687	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60968000-60971600	Enhancers	Primary B cells from peripheral blood	blood
2	chr8:60968200-60971400	Enhancers	Primary B cells from cord blood	blood
3	chr8:60968400-60970000	Flanking Active TSS	GM12878-XiMat	blood
4	chr8:60968400-60972000	Enhancers	Brain Germinal Matrix	brain
5	chr8:60968400-60975000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr8:60968800-60974200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr8:60969000-60970200	Enhancers	Brain Anterior Caudate	brain
8	chr8:60969000-60971000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr8:60969000-60971800	Enhancers	Brain Substantia Nigra	brain
10	chr8:60969000-60972400	Enhancers	Brain Cingulate Gyrus	brain
11	chr8:60969000-60972400	Enhancers	Brain Hippocampus Middle	brain
12	chr8:60969200-60970000	Enhancers	Colon Smooth Muscle	Colon
13	chr8:60969200-60970000	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr8:60969200-60970000	Enhancers	Stomach Smooth Muscle	stomach
15	chr8:60969200-60974200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:60969400-60970000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr8:60969400-60970400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr8:60969400-60970800	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr8:60969600-60970000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr8:60969600-60970600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr8:60969800-60970400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr8:60969800-60971000	Enhancers	Primary hematopoietic stem cells	blood

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