Variant report

Variant	rs639377
Chromosome Location	chr8:60976870-60976871
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1464627	0.86[ASN][1000 genomes]
rs1850971	0.91[EUR][1000 genomes]
rs2611365	0.83[ASN][1000 genomes]
rs2611366	0.83[ASN][1000 genomes]
rs2681560	0.90[EUR][1000 genomes]
rs2681564	0.93[EUR][1000 genomes]
rs2688651	0.96[ASN][1000 genomes]
rs2688653	0.91[EUR][1000 genomes]
rs2688654	0.96[ASN][1000 genomes]
rs504673	0.95[EUR][1000 genomes]
rs551833	0.95[EUR][1000 genomes]
rs577313	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs640861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs674687	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60974200-60979000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:60975000-60978000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:60976600-60977800	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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