Variant report

Variant	rs2689840
Chromosome Location	chr2:168206502-168206503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10930268	0.81[EUR][1000 genomes]
rs10930270	0.81[EUR][1000 genomes]
rs12692859	0.81[EUR][1000 genomes]
rs12995201	0.90[EUR][1000 genomes]
rs1382318	0.81[EUR][1000 genomes]
rs1403897	0.81[EUR][1000 genomes]
rs1403898	0.81[EUR][1000 genomes]
rs1403899	0.81[EUR][1000 genomes]
rs1478384	0.81[EUR][1000 genomes]
rs1478385	0.81[EUR][1000 genomes]
rs1523882	0.81[EUR][1000 genomes]
rs1523883	0.90[EUR][1000 genomes]
rs1568747	0.81[EUR][1000 genomes]
rs1608519	0.81[EUR][1000 genomes]
rs1608520	0.81[EUR][1000 genomes]
rs1916748	0.81[EUR][1000 genomes]
rs1916749	0.81[EUR][1000 genomes]
rs1916750	0.81[EUR][1000 genomes]
rs1916751	0.81[EUR][1000 genomes]
rs1996949	0.81[EUR][1000 genomes]
rs2177442	0.83[EUR][1000 genomes]
rs2204280	0.81[EUR][1000 genomes]
rs2250619	0.81[EUR][1000 genomes]
rs2617365	0.90[EUR][1000 genomes]
rs2617386	0.81[EUR][1000 genomes]
rs2617388	0.81[EUR][1000 genomes]
rs2617391	0.81[EUR][1000 genomes]
rs2617393	0.81[EUR][1000 genomes]
rs2617394	0.81[EUR][1000 genomes]
rs2617398	0.81[EUR][1000 genomes]
rs2617399	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2617400	0.90[EUR][1000 genomes]
rs2689820	0.81[EUR][1000 genomes]
rs2689825	0.81[EUR][1000 genomes]
rs2689826	0.81[EUR][1000 genomes]
rs2689827	0.81[EUR][1000 genomes]
rs2689828	0.81[EUR][1000 genomes]
rs2689829	0.90[EUR][1000 genomes]
rs2689832	0.81[EUR][1000 genomes]
rs2689833	0.81[EUR][1000 genomes]
rs2949009	0.81[EUR][1000 genomes]
rs2949010	0.81[EUR][1000 genomes]
rs4667532	0.89[EUR][1000 genomes]
rs4667949	0.81[EUR][1000 genomes]
rs7576187	0.81[EUR][1000 genomes]
rs899185	0.81[EUR][1000 genomes]
rs940315	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875378	chr2:168107491-168297961	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	esv3364733	chr2:168109919-168302141	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168194200-168211600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:168199200-168209000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:168199600-168221400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:168204200-168209800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr2:168204400-168209800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr2:168204600-168231600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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