Variant report

Variant	rs1523883
Chromosome Location	chr2:168212732-168212733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10177399	0.84[ASN][1000 genomes]
rs10930268	0.90[EUR][1000 genomes]
rs10930270	0.90[EUR][1000 genomes]
rs12620530	0.87[EUR][1000 genomes]
rs12692859	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12995201	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1357605	0.88[EUR][1000 genomes]
rs1357606	0.81[EUR][1000 genomes]
rs1382318	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1403895	0.81[EUR][1000 genomes]
rs1403897	0.90[EUR][1000 genomes]
rs1403898	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1403899	0.90[EUR][1000 genomes]
rs1478384	0.90[EUR][1000 genomes]
rs1478385	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1523882	0.90[EUR][1000 genomes]
rs1523885	0.83[ASN][1000 genomes]
rs1523888	0.81[EUR][1000 genomes]
rs1568747	0.90[EUR][1000 genomes]
rs1608519	0.90[EUR][1000 genomes]
rs1608520	0.90[EUR][1000 genomes]
rs1916748	0.90[EUR][1000 genomes]
rs1916749	0.90[EUR][1000 genomes]
rs1916750	0.90[EUR][1000 genomes]
rs1916751	0.90[EUR][1000 genomes]
rs1996949	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2030657	0.81[EUR][1000 genomes]
rs2177442	0.87[EUR][1000 genomes]
rs2204280	0.84[EUR][1000 genomes]
rs2222504	0.81[EUR][1000 genomes]
rs2250619	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2617365	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2617383	0.81[EUR][1000 genomes]
rs2617386	0.90[EUR][1000 genomes]
rs2617388	0.90[EUR][1000 genomes]
rs2617391	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2617393	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2617394	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2617398	0.98[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2617399	0.90[EUR][1000 genomes]
rs2617400	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2689820	0.90[EUR][1000 genomes]
rs2689825	0.90[EUR][1000 genomes]
rs2689826	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2689827	0.90[EUR][1000 genomes]
rs2689828	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2689829	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2689832	0.90[EUR][1000 genomes]
rs2689833	0.90[EUR][1000 genomes]
rs2689840	0.90[EUR][1000 genomes]
rs2949009	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2949010	0.90[EUR][1000 genomes]
rs4667532	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4667949	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6756322	0.81[EUR][1000 genomes]
rs7576187	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs899185	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs940314	0.81[EUR][1000 genomes]
rs940315	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875378	chr2:168107491-168297961	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	esv3364733	chr2:168109919-168302141	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168199600-168221400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr2:168204600-168231600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr2:168212600-168212800	Enhancers	HUES48 Cell Line	embryonic stem cell

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