Variant report

Variant	rs10177399
Chromosome Location	chr2:168304891-168304892
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10048770	0.87[EUR][1000 genomes]
rs10169923	0.89[EUR][1000 genomes]
rs10183035	0.89[EUR][1000 genomes]
rs10186995	0.89[EUR][1000 genomes]
rs10187544	0.87[EUR][1000 genomes]
rs10193628	0.89[EUR][1000 genomes]
rs10203387	0.87[EUR][1000 genomes]
rs10205907	0.89[EUR][1000 genomes]
rs10206206	0.89[EUR][1000 genomes]
rs10206412	0.89[EUR][1000 genomes]
rs10803824	0.89[EUR][1000 genomes]
rs10930268	0.81[EUR][1000 genomes]
rs10930270	0.81[EUR][1000 genomes]
rs12104569	0.86[EUR][1000 genomes]
rs12692859	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13405810	0.89[EUR][1000 genomes]
rs13413030	0.89[EUR][1000 genomes]
rs13419259	0.87[EUR][1000 genomes]
rs1357605	0.82[EUR][1000 genomes]
rs1357606	0.90[EUR][1000 genomes]
rs1382318	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1403893	0.85[ASN][1000 genomes]
rs1403895	0.90[EUR][1000 genomes]
rs1403897	0.81[EUR][1000 genomes]
rs1403898	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1403899	0.81[EUR][1000 genomes]
rs1478384	0.81[EUR][1000 genomes]
rs1478385	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1523882	0.81[EUR][1000 genomes]
rs1523883	0.84[ASN][1000 genomes]
rs1523885	0.81[ASN][1000 genomes]
rs1523888	0.90[EUR][1000 genomes]
rs1568747	0.81[EUR][1000 genomes]
rs1608519	0.81[EUR][1000 genomes]
rs1608520	0.81[EUR][1000 genomes]
rs1916748	0.81[EUR][1000 genomes]
rs1916749	0.81[EUR][1000 genomes]
rs1916750	0.81[EUR][1000 genomes]
rs1916751	0.81[EUR][1000 genomes]
rs1996949	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2030657	0.90[EUR][1000 genomes]
rs2222504	0.90[EUR][1000 genomes]
rs2250619	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2617383	0.90[EUR][1000 genomes]
rs2617386	0.81[EUR][1000 genomes]
rs2617388	0.81[EUR][1000 genomes]
rs2617391	0.81[EUR][1000 genomes]
rs2617393	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2617394	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2617398	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2617399	0.81[EUR][1000 genomes]
rs2689820	0.81[EUR][1000 genomes]
rs2689825	0.81[EUR][1000 genomes]
rs2689826	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2689827	0.81[EUR][1000 genomes]
rs2689828	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2689829	0.83[ASN][1000 genomes]
rs2689832	0.81[EUR][1000 genomes]
rs2689833	0.81[EUR][1000 genomes]
rs2949009	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2949010	0.81[EUR][1000 genomes]
rs4130760	0.85[ASN][1000 genomes]
rs4667949	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56875650	0.86[EUR][1000 genomes]
rs57979918	0.86[EUR][1000 genomes]
rs59534092	0.85[ASN][1000 genomes]
rs6432996	0.83[EUR][1000 genomes]
rs6720269	0.91[EUR][1000 genomes]
rs6720884	0.84[EUR][1000 genomes]
rs6721252	0.91[EUR][1000 genomes]
rs6721528	0.89[EUR][1000 genomes]
rs6722016	0.86[EUR][1000 genomes]
rs6725730	0.91[EUR][1000 genomes]
rs6726976	0.89[EUR][1000 genomes]
rs6729076	0.91[EUR][1000 genomes]
rs6731777	0.86[EUR][1000 genomes]
rs6739277	0.90[EUR][1000 genomes]
rs6747599	0.87[EUR][1000 genomes]
rs6754396	0.86[EUR][1000 genomes]
rs6756322	0.90[EUR][1000 genomes]
rs73023882	0.91[EUR][1000 genomes]
rs73972270	0.85[ASN][1000 genomes]
rs73972274	0.85[ASN][1000 genomes]
rs73972275	0.81[ASN][1000 genomes]
rs7558831	0.91[EUR][1000 genomes]
rs7567369	0.91[EUR][1000 genomes]
rs7576187	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7585935	0.91[EUR][1000 genomes]
rs7594125	0.83[EUR][1000 genomes]
rs899185	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs940314	0.90[EUR][1000 genomes]
rs940315	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491872	chr2:168220323-168737986	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3388045	chr2:168289403-168424317	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168304000-168307200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr2:168304600-168308000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:168304600-168308000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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