Variant report

Variant	rs10169923
Chromosome Location	chr2:168318624-168318625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10048770	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10166160	1.00[ASN][1000 genomes]
rs10177399	0.89[EUR][1000 genomes]
rs10183035	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10186995	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10187544	0.98[EUR][1000 genomes]
rs10193628	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10203387	0.98[EUR][1000 genomes]
rs10205907	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10206206	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10206412	1.00[EUR][1000 genomes]
rs12104569	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13386818	1.00[ASN][1000 genomes]
rs13405810	1.00[EUR][1000 genomes]
rs13413030	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13419259	0.98[EUR][1000 genomes]
rs1357606	0.81[EUR][1000 genomes]
rs1403895	0.81[EUR][1000 genomes]
rs1523888	0.81[EUR][1000 genomes]
rs2030657	0.81[EUR][1000 genomes]
rs2222504	0.81[EUR][1000 genomes]
rs2617383	0.81[EUR][1000 genomes]
rs4667535	0.80[EUR][1000 genomes]
rs56875650	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57979918	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6432996	0.88[EUR][1000 genomes]
rs6720269	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6720884	0.89[EUR][1000 genomes]
rs6721252	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6721528	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6722016	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6725730	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6726976	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6729076	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6731777	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6739277	0.95[EUR][1000 genomes]
rs6747599	0.98[EUR][1000 genomes]
rs6754396	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6756322	0.81[EUR][1000 genomes]
rs73023882	0.97[EUR][1000 genomes]
rs7558831	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7567369	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7585935	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7594125	0.88[EUR][1000 genomes]
rs940314	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491872	chr2:168220323-168737986	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3388045	chr2:168289403-168424317	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168308400-168322400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:168308600-168325400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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