Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10048770	0.86[EUR][1000 genomes]
rs10169923	0.88[EUR][1000 genomes]
rs10177399	0.83[EUR][1000 genomes]
rs10183035	0.88[EUR][1000 genomes]
rs10186995	0.88[EUR][1000 genomes]
rs10187544	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10193628	0.88[EUR][1000 genomes]
rs10203387	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10205907	0.88[EUR][1000 genomes]
rs10206206	0.88[EUR][1000 genomes]
rs10206412	0.88[EUR][1000 genomes]
rs12104569	0.84[EUR][1000 genomes]
rs13405810	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13413030	0.88[EUR][1000 genomes]
rs13419259	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56875650	0.84[EUR][1000 genomes]
rs57979918	0.84[EUR][1000 genomes]
rs6720269	0.91[EUR][1000 genomes]
rs6720884	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6721252	0.91[EUR][1000 genomes]
rs6721528	0.88[EUR][1000 genomes]
rs6722016	0.84[EUR][1000 genomes]
rs6725730	0.91[EUR][1000 genomes]
rs6726976	0.88[EUR][1000 genomes]
rs6729076	0.91[EUR][1000 genomes]
rs6731777	0.84[EUR][1000 genomes]
rs6739277	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6747599	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6754396	0.84[EUR][1000 genomes]
rs73023882	0.91[EUR][1000 genomes]
rs7558831	0.91[EUR][1000 genomes]
rs7567369	0.91[EUR][1000 genomes]
rs7585935	0.91[EUR][1000 genomes]
rs7594125	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364733	chr2:168109919-168302141	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv491872	chr2:168220323-168737986	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3388045	chr2:168289403-168424317	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168295400-168303200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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