Variant report

Variant	rs10187544
Chromosome Location	chr2:168317021-168317022
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10048770	0.97[EUR][1000 genomes]
rs10169923	0.98[EUR][1000 genomes]
rs10177399	0.87[EUR][1000 genomes]
rs10183035	0.98[EUR][1000 genomes]
rs10186995	0.98[EUR][1000 genomes]
rs10193628	0.98[EUR][1000 genomes]
rs10203387	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10205907	0.98[EUR][1000 genomes]
rs10206206	0.98[EUR][1000 genomes]
rs10206412	0.98[EUR][1000 genomes]
rs10803824	0.81[EUR][1000 genomes]
rs12104569	0.89[EUR][1000 genomes]
rs13405810	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13413030	0.98[EUR][1000 genomes]
rs13419259	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1357606	0.83[EUR][1000 genomes]
rs1403895	0.83[EUR][1000 genomes]
rs1523888	0.83[EUR][1000 genomes]
rs2030657	0.83[EUR][1000 genomes]
rs2222504	0.83[EUR][1000 genomes]
rs2617383	0.83[EUR][1000 genomes]
rs4667535	0.82[EUR][1000 genomes]
rs56875650	0.89[EUR][1000 genomes]
rs57979918	0.89[EUR][1000 genomes]
rs6432996	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6720269	0.95[EUR][1000 genomes]
rs6720884	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6721252	0.95[EUR][1000 genomes]
rs6721528	0.98[EUR][1000 genomes]
rs6722016	0.89[EUR][1000 genomes]
rs6725730	0.95[EUR][1000 genomes]
rs6726976	0.98[EUR][1000 genomes]
rs6729076	0.95[EUR][1000 genomes]
rs6731777	0.89[EUR][1000 genomes]
rs6739277	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6747599	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6754396	0.89[EUR][1000 genomes]
rs6756322	0.83[EUR][1000 genomes]
rs73023882	0.95[EUR][1000 genomes]
rs7558831	0.95[EUR][1000 genomes]
rs7567369	0.95[EUR][1000 genomes]
rs7585935	0.95[EUR][1000 genomes]
rs7594125	0.86[EUR][1000 genomes]
rs940314	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491872	chr2:168220323-168737986	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3388045	chr2:168289403-168424317	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168308400-168322400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:168308600-168325400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links